Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   KU504_RS08075 Genome accession   NZ_CP077926
Coordinates   1630408..1631412 (+) Length   334 a.a.
NCBI ID   WP_001005764.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1625408..1636412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU504_RS08040 (KU504_08010) mreD 1626082..1626612 (+) 531 WP_001259927.1 rod shape-determining protein MreD -
  KU504_RS08045 (KU504_08015) rplU 1626848..1627156 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  KU504_RS08050 (KU504_08020) - 1627162..1627482 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  KU504_RS08055 (KU504_08025) rpmA 1627494..1627778 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  KU504_RS08060 (KU504_08030) obgE 1628000..1629292 (+) 1293 WP_000496098.1 GTPase ObgE -
  KU504_RS08065 (KU504_08035) - 1629305..1629760 (+) 456 WP_000368902.1 ACT domain-containing protein -
  KU504_RS08070 (KU504_08040) ruvA 1629774..1630376 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  KU504_RS08075 (KU504_08045) ruvB 1630408..1631412 (+) 1005 WP_001005764.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KU504_RS08080 (KU504_08050) queA 1631414..1632439 (+) 1026 WP_031928192.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  KU504_RS08085 (KU504_08055) tgt 1632462..1633601 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  KU504_RS08090 (KU504_08060) yajC 1633620..1633880 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37703.98 Da        Isoelectric Point: 5.0832

>NTDB_id=511547 KU504_RS08075 WP_001005764.1 1630408..1631412(+) (ruvB) [Staphylococcus aureus strain 197]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDDESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=511547 KU504_RS08075 WP_001005764.1 1630408..1631412(+) (ruvB) [Staphylococcus aureus strain 197]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTGGGCACAGGTATTGATGATGAAAGTGCTATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTTGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGGCCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515