NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	KU504_RS08070	Genome accession	NZ_CP077926
Coordinates	1629774..1630376 (+)	Length	200 a.a.
NCBI ID	WP_000271547.1	Uniprot ID	Q2YT88
Organism	Staphylococcus aureus strain 197
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1624774..1635376

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KU504_RS08030 (KU504_08000)	-	1624922..1625041 (+)	120	WP_000840600.1	hypothetical protein	-
KU504_RS08035 (KU504_08005)	mreC	1625240..1626082 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
KU504_RS08040 (KU504_08010)	mreD	1626082..1626612 (+)	531	WP_001259927.1	rod shape-determining protein MreD	-
KU504_RS08045 (KU504_08015)	rplU	1626848..1627156 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
KU504_RS08050 (KU504_08020)	-	1627162..1627482 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
KU504_RS08055 (KU504_08025)	rpmA	1627494..1627778 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
KU504_RS08060 (KU504_08030)	obgE	1628000..1629292 (+)	1293	WP_000496098.1	GTPase ObgE	-
KU504_RS08065 (KU504_08035)	-	1629305..1629760 (+)	456	WP_000368902.1	ACT domain-containing protein	-
KU504_RS08070 (KU504_08040)	ruvA	1629774..1630376 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
KU504_RS08075 (KU504_08045)	ruvB	1630408..1631412 (+)	1005	WP_001005764.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
KU504_RS08080 (KU504_08050)	queA	1631414..1632439 (+)	1026	WP_031928192.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
KU504_RS08085 (KU504_08055)	tgt	1632462..1633601 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
KU504_RS08090 (KU504_08060)	yajC	1633620..1633880 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 22262.46 Da Isoelectric Point: 6.0240

                                >NTDB_id=511546 KU504_RS08070 WP_000271547.1 1629774..1630376(+) (ruvA) [Staphylococcus aureus strain 197]

MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI

GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML

ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

Download Length: 603 bp

                                >NTDB_id=511546 KU504_RS08070 WP_000271547.1 1629774..1630376(+) (ruvA) [Staphylococcus aureus strain 197]

ATGTACGCGTATGTCAAAGGTAAGTTAACGCATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA

AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG

AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT

GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC

GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA

CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA

GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT

TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425

Detailed information NTG0511546