Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   STCNRZ1202_RS07780 Genome accession   NZ_CP065506
Coordinates   1490954..1493122 (-) Length   722 a.a.
NCBI ID   WP_347229603.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1202     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485954..1498122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1202_RS07755 (STCNRZ1202_07760) - 1486850..1487056 (-) 207 WP_084829836.1 bacteriocin class II family protein -
  STCNRZ1202_RS07760 (STCNRZ1202_07765) - 1487306..1488037 (+) 732 WP_002948869.1 LytTR family DNA-binding domain-containing protein -
  STCNRZ1202_RS07765 - 1488574..1489377 (+) 804 WP_224103634.1 ATP-binding protein -
  STCNRZ1202_RS07770 (STCNRZ1202_07775) - 1489395..1489556 (-) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  STCNRZ1202_RS07775 (STCNRZ1202_07780) - 1489571..1490938 (-) 1368 WP_347229602.1 bacteriocin secretion accessory protein -
  STCNRZ1202_RS07780 (STCNRZ1202_07785) comA/nlmT 1490954..1493122 (-) 2169 WP_347229603.1 peptide cleavage/export ABC transporter Regulator
  STCNRZ1202_RS07785 (STCNRZ1202_07790) - 1494121..1495866 (-) 1746 WP_347229604.1 ABC transporter ATP-binding protein -
  STCNRZ1202_RS07790 (STCNRZ1202_07795) - 1495859..1497616 (-) 1758 WP_023909920.1 ABC transporter transmembrane domain-containing protein -
  STCNRZ1202_RS07795 - 1497804..1498010 (-) 207 WP_011681579.1 hypothetical protein -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 81119.04 Da        Isoelectric Point: 7.2321

>NTDB_id=511397 STCNRZ1202_RS07780 WP_347229603.1 1490954..1493122(-) (comA/nlmT) [Streptococcus thermophilus strain CNRZ1202]
MKGFGTFRFRRTFVPQIDMRDCGVAALASVAKYYGSDYSLAHLRELAKTNKEGTTALGLVEAAKKIGFETRAIKAEMSLF
EMEDVPYPFIAHVNKDGKLQHYYVIYKSTKDYLIIGDPDPSVKVTKMTKERFEKEWTGVTLFMGPEPSYKPHKDKKNGLW
DFLPLIFKQRSLIANIVFASLLVTLINILGSYYLQGILDEYVPNQMKSTLGIISIGLVVTYVLQQMMTFARDYLLTILSQ
RLTIDVILSYIRHIFELPMSFFATRRKGEVISRFSDANSIIDALASTILSLFLDFSIVIIVGGVLLIQNSNLFKLVLCSV
PIYTLIVFAFMKPFERMNHDVMQSNAMVNSAIIEDINGIETIKSLTSEEVCYQKIDGEFVDYLDNSFRLSKLSILQTSLK
QGAQLILNVLILWTGAQLVMGNTISIGQLITFNMLLSYFTNPLENIINLQTKLQSAKVANTRLNEVYLIESEFGQSDDTY
QEGIADGDITVTDLSYKYGFGRDTLTDVSLTIRQGEKISFVGVSGSGKTTLAKMLVNFYQPYKGHIDFNGQNISRIDKKT
LRQHINYLPQQSYIFSGSVLENLTLGAARGITQADILKACEIAEIRQDIENMPMGFQTELSDGAGLSGGQKQRIALARAL
LTKSPVLILDEATSGLDVLTEKQVIDNLLALKDKTIIFVAHRLSIAERTERIVVIDQGRVVETGSHQDLMSYPGFYYQLF
RK

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=511397 STCNRZ1202_RS07780 WP_347229603.1 1490954..1493122(-) (comA/nlmT) [Streptococcus thermophilus strain CNRZ1202]
ATGAAAGGGTTTGGTACGTTTCGTTTTCGTAGGACTTTTGTCCCTCAAATAGACATGAGGGATTGTGGAGTTGCTGCCTT
GGCATCAGTGGCCAAGTACTATGGTTCAGATTATTCATTAGCACATCTGCGTGAGTTGGCGAAGACCAATAAAGAAGGGA
CAACTGCCTTAGGTCTTGTAGAGGCTGCTAAAAAAATTGGCTTTGAAACGAGAGCTATAAAGGCTGAAATGTCGCTCTTT
GAGATGGAAGATGTTCCTTATCCTTTTATTGCTCATGTTAATAAAGATGGGAAGCTTCAACATTATTATGTTATTTATAA
AAGCACCAAGGATTATCTGATAATTGGAGACCCTGATCCAAGTGTAAAAGTAACTAAAATGACTAAAGAGCGTTTTGAGA
AAGAGTGGACAGGTGTTACTCTTTTTATGGGACCGGAACCCAGTTATAAACCACATAAGGATAAGAAAAATGGACTCTGG
GACTTTCTCCCTTTGATCTTTAAACAAAGGTCCTTGATAGCTAATATTGTCTTTGCCAGTCTCTTGGTTACTTTAATAAA
TATTTTAGGTTCCTATTATTTACAAGGTATTCTAGACGAATATGTCCCTAATCAAATGAAGTCTACCTTAGGAATTATCT
CAATTGGATTAGTTGTGACCTATGTTTTACAACAAATGATGACTTTTGCAAGAGATTATCTCTTAACCATACTGAGTCAG
CGATTGACCATTGACGTTATCTTGTCCTACATACGACATATCTTTGAACTCCCAATGTCTTTTTTTGCCACAAGACGTAA
AGGGGAGGTTATCTCACGTTTTAGTGATGCTAACTCTATTATCGATGCTCTGGCTTCGACGATATTATCACTTTTCCTTG
ATTTCTCTATTGTGATTATCGTAGGAGGCGTGTTATTGATACAAAATAGCAATCTCTTCAAGCTAGTTCTTTGTTCGGTT
CCAATTTATACCCTTATCGTCTTTGCCTTTATGAAACCTTTTGAGCGAATGAATCATGACGTCATGCAGAGTAATGCTAT
GGTTAATTCAGCCATCATTGAGGACATTAATGGGATTGAAACCATAAAGTCACTAACCAGCGAAGAAGTATGCTATCAAA
AGATTGATGGTGAGTTTGTTGACTATCTAGACAATTCTTTTCGCCTTTCTAAGTTATCTATACTACAAACATCATTGAAA
CAAGGTGCTCAACTTATTTTAAATGTACTTATCCTCTGGACAGGTGCTCAGTTGGTGATGGGAAATACCATTTCGATAGG
ACAATTGATTACTTTTAATATGTTGCTTTCCTACTTCACGAATCCTTTGGAAAATATCATTAACCTGCAAACCAAGTTAC
AGTCTGCTAAGGTAGCTAATACTAGGCTCAATGAAGTCTATCTGATTGAATCAGAGTTTGGACAAAGTGATGATACCTAT
CAAGAAGGCATTGCGGATGGAGATATCACTGTTACGGATTTATCTTATAAATATGGTTTTGGTCGTGATACTTTGACTGA
TGTCAGTTTGACGATTAGACAAGGAGAAAAAATCAGTTTTGTTGGTGTCAGTGGATCTGGTAAGACTACTCTAGCTAAAA
TGTTGGTCAATTTTTATCAACCATATAAGGGGCACATAGATTTTAATGGTCAAAATATTAGTCGCATAGACAAGAAAACT
CTTCGTCAACATATTAACTATCTCCCTCAGCAATCCTATATATTTAGTGGTAGTGTTTTAGAAAATCTTACTTTAGGTGC
AGCACGGGGTATTACGCAAGCTGATATTTTGAAAGCTTGTGAAATAGCAGAAATTCGTCAAGATATTGAAAACATGCCTA
TGGGGTTTCAGACAGAGCTGTCTGATGGAGCAGGTCTGTCTGGAGGGCAAAAGCAACGTATCGCTTTGGCGCGTGCACTA
CTAACGAAATCTCCTGTACTAATCTTAGATGAAGCAACTAGCGGATTGGATGTTTTGACAGAAAAGCAGGTTATTGATAA
CCTCCTAGCACTAAAAGATAAAACGATCATCTTTGTAGCACACAGGCTTAGTATCGCTGAGCGGACCGAACGTATCGTAG
TCATTGATCAGGGACGCGTAGTGGAGACAGGTTCTCATCAAGACCTGATGTCTTATCCAGGTTTCTATTATCAATTATTT
AGAAAGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(175-443)

Peptidase C39 family (Peptidase_C39)

(12-147)

ABC transporter (ABC_tran)

(505-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

67.927

98.892

0.672
  comA Streptococcus mitis NCTC 12261

66.526

98.476

0.655
  comA Streptococcus pneumoniae Rx1

66.104

98.476

0.651
  comA Streptococcus pneumoniae D39

66.104

98.476

0.651
  comA Streptococcus pneumoniae R6

66.104

98.476

0.651
  comA Streptococcus mitis SK321

65.823

98.476

0.648
  comA Streptococcus pneumoniae TIGR4

65.682

98.476

0.647
  comA Streptococcus gordonii str. Challis substr. CH1

64.426

98.892

0.637