Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   SIR_RS17265 Genome accession   NC_022246
Coordinates   1547634..1549649 (-) Length   671 a.a.
NCBI ID   WP_021003148.1    Uniprot ID   T1ZG56
Organism   Streptococcus intermedius B196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1542634..1554649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS17240 (SIR_1475) - 1542864..1544078 (-) 1215 WP_003074453.1 pyridoxal phosphate-dependent aminotransferase -
  SIR_RS17245 (SIR_1476) - 1544231..1544683 (+) 453 WP_003028799.1 universal stress protein -
  SIR_RS17250 (SIR_1477) - 1544729..1546117 (-) 1389 WP_021003146.1 Cof-type HAD-IIB family hydrolase -
  SIR_RS17255 (SIR_1478) - 1546182..1547144 (+) 963 WP_021003147.1 asparaginase -
  SIR_RS17265 (SIR_1479) recG/mmsA 1547634..1549649 (-) 2016 WP_021003148.1 ATP-dependent DNA helicase RecG Machinery gene
  SIR_RS17270 (SIR_1480) alr 1549753..1550859 (-) 1107 WP_021003149.1 alanine racemase -
  SIR_RS17275 (SIR_1481) acpS 1550846..1551211 (-) 366 WP_009569309.1 holo-ACP synthase -
  SIR_RS17280 (SIR_1482) - 1551253..1552293 (-) 1041 WP_021003150.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75432.51 Da        Isoelectric Point: 6.6330

>NTDB_id=51135 SIR_RS17265 WP_021003148.1 1547634..1549649(-) (recG/mmsA) [Streptococcus intermedius B196]
MNLHQPLTVLPGVGPKSAEKLSKLGIENLQDLLLYFPFRYEDFKSKNVLELEDGERAVVSGVVVTPANVQYYGYKRNRLR
FTIKQGEVVLAVNFFNQPYLADKVALGSTIAIFGKWDKAKAGLTGMKILAQVEDDLQPVYRVAQGISQASLVKTIKIAFD
QGLDLLLEENLPQILLDHYQLLGRSQAVRAMHFPKDLAEYKQAVRRVKFEELFYFQMQLQVLKRESKDVSHGFAIPWRDD
LLEKKLSLLPFELTDAQKRSLDDILQDMQAPIHMNRLLQGDVGSGKTVVACLAMYAAYSAGVQSALMVPTEILAEQHFAS
LTQLFPELRIILLTGGMKLVERKQALDAIKTGQVDMIVGTHALIQEGVSYHRLGLVIIDEQHRFGVEQRRVLREKGDNPD
VLMMTATPIPRTLTITAFGDMDVSVIDQMPVGRKPIITRWVKHEQLNVVLNWLEKELQVGAQVYVISPLIEESEALDLKN
AIALEEELKIYFGDKAQVSLLHGKMKNDEKDAIMQGFKRGKIDILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTESGKKRMKIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIVEDYPILEEAKK
VASQIVSIPDWRTHADWHIVALYLDKQGYLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=51135 SIR_RS17265 WP_021003148.1 1547634..1549649(-) (recG/mmsA) [Streptococcus intermedius B196]
ATGAATTTACACCAACCTTTAACGGTTCTGCCAGGTGTAGGACCAAAATCTGCCGAAAAATTGAGTAAACTTGGTATTGA
GAACCTGCAGGATTTGCTGCTCTATTTTCCATTTCGTTATGAAGACTTTAAAAGTAAAAATGTGTTAGAATTGGAAGATG
GTGAAAGGGCAGTTGTTTCAGGAGTGGTCGTTACACCGGCTAACGTGCAGTATTATGGTTATAAGCGTAATCGCCTGCGT
TTTACTATCAAGCAAGGTGAAGTGGTCCTTGCCGTCAACTTTTTTAATCAGCCTTATCTAGCAGATAAGGTAGCACTTGG
TTCAACTATTGCTATTTTTGGCAAATGGGATAAGGCCAAGGCTGGTTTGACTGGAATGAAAATTTTAGCACAAGTAGAAG
ATGATTTGCAGCCAGTCTATCGGGTGGCTCAGGGGATTAGTCAAGCGAGTTTAGTAAAGACTATTAAAATAGCTTTTGAC
CAAGGCCTAGACCTTCTATTGGAAGAAAATCTGCCTCAAATTCTGCTAGATCATTATCAACTATTGGGACGTAGCCAAGC
TGTGCGCGCGATGCATTTTCCAAAAGATTTGGCAGAATACAAGCAAGCTGTACGGCGGGTTAAATTTGAAGAACTTTTTT
ACTTTCAAATGCAATTGCAGGTTTTAAAGAGGGAAAGCAAGGATGTGAGTCACGGATTTGCTATCCCGTGGCGAGATGAT
TTATTAGAGAAGAAGTTGTCATTGCTCCCTTTTGAGCTAACGGATGCCCAGAAACGGAGTCTCGATGACATTCTACAGGA
TATGCAAGCCCCGATCCACATGAACCGACTTTTACAGGGAGACGTTGGTAGTGGAAAGACAGTGGTTGCGTGTCTAGCTA
TGTATGCCGCTTATTCAGCTGGGGTGCAGTCTGCTCTTATGGTACCGACTGAAATTTTGGCTGAACAGCACTTTGCTAGC
CTCACTCAGCTTTTTCCTGAGTTACGGATAATTCTGTTGACAGGAGGAATGAAATTAGTAGAACGAAAGCAGGCATTAGA
TGCTATTAAAACTGGACAGGTGGATATGATTGTTGGAACCCATGCCCTGATTCAAGAAGGAGTTTCCTATCATCGTTTGG
GCCTAGTAATTATTGATGAGCAGCATCGTTTTGGAGTGGAGCAGAGACGGGTTCTGCGGGAAAAGGGGGATAATCCTGAT
GTTCTCATGATGACTGCAACACCGATTCCGAGGACACTTACGATCACTGCCTTTGGCGATATGGATGTGTCGGTTATTGA
TCAAATGCCAGTGGGGCGTAAGCCGATTATCACTCGCTGGGTCAAGCACGAGCAGCTGAATGTGGTTCTCAATTGGTTGG
AGAAAGAGCTGCAAGTAGGTGCTCAGGTATATGTCATCTCTCCTTTGATTGAGGAGTCAGAAGCGCTGGATCTAAAAAAT
GCTATTGCTTTGGAAGAGGAATTAAAGATTTATTTCGGTGACAAAGCACAAGTGTCTCTGCTACATGGTAAAATGAAGAA
CGATGAAAAAGATGCCATTATGCAGGGCTTTAAGAGAGGAAAAATAGATATTCTGGTATCTACAACAGTCATTGAAGTCG
GTGTTAATGTGCCAAATGCTACGGTTATGCTAATCATGGATGCGGATCGTTTTGGGCTCAGTCAGCTCCACCAATTGCGC
GGGCGGGTAGGACGTGGAGACAAGCAATCTTATGCGGTTCTCGTGGCTAATCCCAAGACTGAATCTGGTAAGAAGCGCAT
GAAAATCATGACAGAAACGACTAACGGTTTCGTCTTAGCTGAGGAAGACCTGAAAATGCGTGGTTCTGGTGAAATCTTTG
GCACTCGGCAGTCTGGTTTACCAGAATTTCAGGTGGCGGATATTGTAGAGGATTATCCGATTTTAGAGGAAGCCAAAAAA
GTTGCTAGCCAAATTGTATCTATTCCTGATTGGCGAACGCATGCAGATTGGCATATTGTAGCACTTTATTTGGATAAGCA
GGGTTATTTGGACTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-156)

Helicase conserved C-terminal domain (Helicase_C)

(447-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-649)

DEAD/DEAH box helicase (DEAD)

(254-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZG56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

76.9

100

0.769
  recG/mmsA Streptococcus pneumoniae R36A

76.9

100

0.769
  recG Bacillus subtilis subsp. subtilis str. 168

48.23

100

0.487
  recG Neisseria meningitidis strain C311

38.71

100

0.393

Multiple sequence alignment