Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SPAF_RS03800 Genome accession   NC_017905
Coordinates   741189..742139 (+) Length   316 a.a.
NCBI ID   WP_013903305.1    Uniprot ID   I1ZL05
Organism   Streptococcus parasanguinis FW213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 736189..747139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS03780 (Spaf_0720) - 736879..737586 (+) 708 WP_003017792.1 glucosamine-6-phosphate deaminase -
  SPAF_RS03785 (Spaf_0721) - 737775..739124 (+) 1350 WP_013903302.1 DUF1958 domain-containing protein -
  SPAF_RS03790 (Spaf_0722) - 739192..740364 (+) 1173 WP_013903303.1 MFS transporter -
  SPAF_RS03795 (Spaf_0723) - 740533..741114 (+) 582 WP_013903304.1 hypothetical protein -
  SPAF_RS03800 (Spaf_0724) coiA 741189..742139 (+) 951 WP_013903305.1 competence protein CoiA family protein Machinery gene
  SPAF_RS03805 (Spaf_0725) pepF 742212..744014 (+) 1803 WP_013903306.1 oligoendopeptidase F Regulator
  SPAF_RS03810 (Spaf_0726) - 744016..744735 (+) 720 WP_013903307.1 O-methyltransferase -
  SPAF_RS03815 (Spaf_0727) prsA 744808..745752 (+) 945 WP_013903308.1 peptidylprolyl isomerase PrsA -
  SPAF_RS03820 (Spaf_0728) - 746006..746491 (+) 486 WP_041818133.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 37762.24 Da        Isoelectric Point: 6.9943

>NTDB_id=51130 SPAF_RS03800 WP_013903305.1 741189..742139(+) (coiA) [Streptococcus parasanguinis FW213]
MFIAMDNNQQRWNCIKEVPPTTAGPFYCLACHSQVRLKNGSVLRAHFAHVELQHCPYHHEAESFEHLELKASLYDWASKE
SKTEVESYLADFQQIADLLVVDKNLALEVQCSSLSLERLKERSDAYRSHGYQVYWLLGKKLWLKERLTKLQAGFLYFSQN
RGFHLWELDLAKKELRLQYLIHEDLRGRLHYQTEIFPFGQRSLLEVLRTPYLSQSMQQMAVELDRTFLTYIQQQLFYRHP
KWMRFQEELYLQGHHLLELGLDFFYPLCRPILSQNLLQIEEDVEGYYQQFMAYYQSQGIQPVQILYPPRFYAQQKS

Nucleotide


Download         Length: 951 bp        

>NTDB_id=51130 SPAF_RS03800 WP_013903305.1 741189..742139(+) (coiA) [Streptococcus parasanguinis FW213]
ATGTTTATTGCCATGGATAACAATCAACAGAGGTGGAACTGTATCAAGGAGGTCCCACCTACAACAGCTGGTCCTTTCTA
TTGCTTGGCTTGTCACAGTCAAGTGCGTCTAAAAAATGGCTCGGTTCTACGGGCTCATTTTGCTCATGTAGAATTACAGC
ATTGTCCCTATCATCACGAAGCTGAGAGTTTTGAACATCTGGAATTGAAAGCCAGTCTTTATGATTGGGCCTCTAAGGAG
TCTAAAACAGAGGTAGAAAGTTATTTAGCAGACTTTCAACAAATTGCCGATCTTTTGGTAGTAGACAAGAACTTAGCTTT
GGAAGTGCAGTGTAGCTCCTTATCTTTAGAACGCTTGAAGGAGAGAAGCGATGCTTATCGATCCCACGGTTACCAGGTCT
ATTGGTTACTTGGTAAAAAGTTGTGGCTCAAGGAAAGACTAACAAAACTGCAGGCTGGCTTTCTTTATTTTAGTCAGAAT
CGAGGTTTTCATCTTTGGGAATTGGATCTGGCAAAGAAAGAGCTACGTTTACAATACCTCATTCATGAGGATTTACGAGG
GCGATTGCATTATCAAACAGAAATTTTCCCTTTTGGTCAAAGGTCTTTACTGGAAGTCTTACGGACCCCTTATCTTTCGC
AATCCATGCAACAAATGGCAGTCGAGCTCGATCGGACATTTTTAACGTATATACAGCAGCAACTCTTTTATCGTCACCCA
AAGTGGATGAGGTTTCAGGAAGAACTCTATTTGCAGGGACACCATCTACTGGAACTAGGCTTGGATTTCTTTTATCCTCT
TTGTCGTCCGATCCTTTCACAGAACTTACTCCAAATTGAAGAGGATGTAGAAGGTTACTACCAGCAATTTATGGCCTATT
ATCAGTCGCAAGGGATCCAACCTGTTCAGATCCTCTATCCTCCACGTTTTTATGCTCAACAGAAAAGCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(25-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1ZL05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

51.757

99.051

0.513
  coiA Streptococcus pneumoniae Rx1

50.799

99.051

0.503
  coiA Streptococcus pneumoniae D39

50.799

99.051

0.503
  coiA Streptococcus pneumoniae R6

50.799

99.051

0.503
  coiA Streptococcus pneumoniae TIGR4

50.799

99.051

0.503
  coiA Lactococcus lactis subsp. cremoris KW2

42.857

100

0.437

Multiple sequence alignment