Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SPAF_RS03805 Genome accession   NC_017905
Coordinates   742212..744014 (+) Length   600 a.a.
NCBI ID   WP_013903306.1    Uniprot ID   I1ZL06
Organism   Streptococcus parasanguinis FW213     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 737212..749014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS03785 (Spaf_0721) - 737775..739124 (+) 1350 WP_013903302.1 DUF1958 domain-containing protein -
  SPAF_RS03790 (Spaf_0722) - 739192..740364 (+) 1173 WP_013903303.1 MFS transporter -
  SPAF_RS03795 (Spaf_0723) - 740533..741114 (+) 582 WP_013903304.1 hypothetical protein -
  SPAF_RS03800 (Spaf_0724) coiA 741189..742139 (+) 951 WP_013903305.1 competence protein CoiA family protein Machinery gene
  SPAF_RS03805 (Spaf_0725) pepF 742212..744014 (+) 1803 WP_013903306.1 oligoendopeptidase F Regulator
  SPAF_RS03810 (Spaf_0726) - 744016..744735 (+) 720 WP_013903307.1 O-methyltransferase -
  SPAF_RS03815 (Spaf_0727) prsA 744808..745752 (+) 945 WP_013903308.1 peptidylprolyl isomerase PrsA -
  SPAF_RS03820 (Spaf_0728) - 746006..746491 (+) 486 WP_041818133.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69196.05 Da        Isoelectric Point: 4.6037

>NTDB_id=51131 SPAF_RS03805 WP_013903306.1 742212..744014(+) (pepF) [Streptococcus parasanguinis FW213]
MVKQRNEIDEKYQWDLSTIFATDQAWEEEAASLAADIKAASHYAGHLLDSAQTLLETTNAYLELSRRLEKVYVYAHMKND
QDTRVAKYQEYQSKGMSLYSLLGETFAFYEPEFMAITDEQYKAFVSEVPALEQYGHYFDRLLEKKEHVLSQKEEELLAGA
GEIFAAGGETFEILDNADIVFPTVHDDKGEEVQLTHGNYISLVESKDRAVRKEAYEGLYKVYEQYQHTYAKTLQTNVKVH
NFNAKVRKFSSAREAALSENFVPESVYDSLVTAVNKHLPLLQRYVQLRSKILGISDLKMYDMYTPLSDTDYKFTYEESLA
KAEEVLAVLGEDYLSRVKRAFSERWIDVHVNQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTERLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGTVLTSEF
LNNLYAELNEKYYGLSKEDNPEIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGTQEDRDKYIDYLKAGNSDYPL
NVIRKAGVDMEKEDYLDAAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=51131 SPAF_RS03805 WP_013903306.1 742212..744014(+) (pepF) [Streptococcus parasanguinis FW213]
ATGGTAAAACAACGTAATGAAATTGATGAAAAATACCAATGGGATTTGTCGACAATTTTTGCGACAGATCAAGCTTGGGA
AGAAGAAGCAGCTAGCTTAGCTGCAGATATTAAAGCAGCAAGCCACTATGCTGGCCATTTGTTGGATTCAGCACAAACGC
TTTTGGAGACAACCAATGCTTATTTGGAATTGAGCCGTCGCTTAGAAAAGGTCTATGTCTATGCTCATATGAAAAATGAC
CAAGATACACGAGTGGCTAAATACCAAGAATACCAATCAAAAGGGATGTCTCTTTATAGCTTGTTAGGTGAAACCTTTGC
CTTCTATGAGCCTGAATTCATGGCCATTACGGATGAGCAATACAAGGCCTTTGTGAGTGAAGTTCCAGCCTTGGAACAAT
ATGGTCATTATTTTGATCGTTTGCTAGAGAAAAAAGAACATGTCTTGTCTCAAAAAGAAGAGGAATTACTTGCAGGAGCT
GGTGAGATCTTTGCGGCTGGTGGTGAAACTTTTGAAATCTTGGACAATGCAGATATTGTTTTCCCTACTGTACATGATGA
CAAGGGCGAAGAAGTTCAATTAACACATGGAAACTATATTTCTTTGGTAGAATCAAAAGATCGTGCCGTTCGTAAAGAAG
CTTACGAAGGTCTCTACAAGGTCTATGAACAGTACCAACATACCTATGCTAAAACCTTGCAAACCAATGTAAAAGTTCAC
AACTTTAATGCTAAAGTTCGCAAATTCTCTTCTGCCCGTGAAGCGGCCCTTTCTGAAAACTTTGTGCCAGAAAGTGTTTA
TGATAGCTTGGTAACAGCTGTGAACAAACACTTGCCACTCTTGCAACGCTATGTACAATTGCGTTCAAAAATTCTAGGTA
TCTCAGACTTGAAGATGTACGATATGTATACGCCATTATCAGATACAGACTACAAGTTTACCTATGAAGAATCATTGGCT
AAAGCAGAAGAAGTCTTGGCTGTTTTGGGGGAGGACTATCTTTCTCGTGTGAAACGTGCCTTTAGCGAACGGTGGATTGA
TGTGCATGTCAACCAAGGGAAACGCTCAGGTGCCTATTCAGGTGGTTCTTATGATACCAATGCTTTCATGTTGTTAAACT
GGCAAGATACATTGGATAATCTCTTCACCTTGGTGCATGAAACTGGTCACAGTATGCATTCTAGCTATACCCGTGAAACC
CAACCTTATGTCTATGGGGACTACTCAATTTTCCTTGCTGAAATCGCCTCTACAACCAATGAAAATATCTTGACTGAACG
TCTGTTAGAAGAAGTAGAAGATGATGCAACTCGTTTTGCTATTTTGAATCACTTCTTGGATGGCTTCCGTGGAACGGTCT
TCCGTCAAACCCAGTTTGCCGAATTTGAGCATGCCATTCATAAAGCAGACCAAGAAGGTACCGTTTTGACTAGTGAGTTC
TTGAACAACCTTTATGCAGAGCTCAATGAAAAATACTATGGTCTTTCAAAAGAAGACAACCCTGAGATCCAATATGAATG
GGCTCGGATTCCTCACTTCTACTATAACTACTATGTCTTCCAATATTCAACTGGTTTTGCAGCAGCTTCAGCCTTAGCTG
AAAAAATTGTTCATGGAACCCAGGAGGATCGTGATAAATATATCGACTACTTGAAGGCTGGAAACTCTGATTATCCACTA
AATGTCATCCGCAAAGCAGGTGTGGATATGGAAAAAGAAGACTATTTGGACGCAGCCTTTGCAGTCTTTGAACGTCGTTT
GAATGAATTTGAAGCCCTAGTAGAAAAATTAGGACTCGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1ZL06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.631

99.333

0.692

Multiple sequence alignment