Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   STT55_RS06860 Genome accession   NZ_CP065502
Coordinates   1313304..1313891 (-) Length   195 a.a.
NCBI ID   WP_232086640.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST55     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1308304..1318891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT55_RS06840 (STT55_06785) - 1308845..1309840 (+) 996 WP_022096609.1 LacI family DNA-binding transcriptional regulator -
  STT55_RS06845 (STT55_06790) - 1310320..1310874 (-) 555 Protein_1296 IS3 family transposase -
  STT55_RS06850 (STT55_06800) - 1310996..1312768 (-) 1773 Protein_1297 ZmpA/ZmpB/ZmpC family metallo-endopeptidase -
  STT55_RS06855 (STT55_06805) - 1312998..1313249 (+) 252 Protein_1298 ATP-binding cassette domain-containing protein -
  STT55_RS06860 (STT55_06810) rcrQ 1313304..1313891 (-) 588 WP_232086640.1 ATP-binding cassette domain-containing protein Regulator
  STT55_RS06865 - 1313888..1314013 (-) 126 WP_260223497.1 hypothetical protein -
  STT55_RS06870 (STT55_06820) gshAB 1314843..1317107 (+) 2265 WP_173940431.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  STT55_RS06875 (STT55_06825) - 1317209..1318293 (+) 1085 Protein_1302 ISL3 family transposase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21631.35 Da        Isoelectric Point: 4.3938

>NTDB_id=511262 STT55_RS06860 WP_232086640.1 1313304..1313891(-) (rcrQ) [Streptococcus thermophilus strain ST55]
MINRFYDIQSGVITYDGIDVKLIEKDSLRRSLGIVLQDTHLFTGTIAENIAYGRADATREEILEAARIANVDSFVQHLDN
DYDTVLTDDGAGLSNGQRQLIAIARAALANAPVLILDEATSSIDSRTEKMVQEGMDRLMEGRTVFVIAHRLSTIVNSDVI
LVMDHGRIIERGDHDTLMEQGGTYYRLYTGGLEID

Nucleotide


Download         Length: 588 bp        

>NTDB_id=511262 STT55_RS06860 WP_232086640.1 1313304..1313891(-) (rcrQ) [Streptococcus thermophilus strain ST55]
TTGATTAATCGTTTCTACGACATCCAATCTGGTGTGATTACTTATGATGGCATCGATGTGAAACTGATTGAAAAAGATTC
TCTTCGTCGATCACTTGGTATCGTACTTCAAGATACGCATCTCTTCACAGGGACTATCGCTGAAAATATTGCCTACGGCC
GTGCGGATGCGACTCGCGAGGAAATTCTTGAAGCTGCTCGTATTGCTAACGTGGATTCTTTTGTGCAACATTTGGACAAT
GATTACGACACTGTTCTTACAGATGATGGCGCAGGCTTGTCTAATGGACAACGTCAGCTGATTGCCATTGCGCGTGCTGC
CCTTGCCAATGCACCGGTTCTCATCCTTGATGAAGCGACTTCTTCGATTGACTCTCGTACTGAAAAAATGGTACAAGAGG
GGATGGACCGGCTTATGGAAGGACGTACGGTATTCGTTATCGCCCATCGTCTTTCAACCATCGTTAACTCTGACGTTATC
CTGGTTATGGATCATGGGCGTATCATTGAACGTGGTGACCATGATACCCTTATGGAACAAGGTGGTACCTACTACCGACT
TTATACTGGCGGTCTTGAAATTGATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.596

96.41

0.497
  comA Streptococcus gordonii str. Challis substr. CH1

43.386

96.923

0.421
  comA Streptococcus mitis NCTC 12261

42.857

96.923

0.415
  comA Streptococcus mitis SK321

42.328

96.923

0.41
  comA Streptococcus pneumoniae R6

42.553

96.41

0.41
  comA Streptococcus pneumoniae Rx1

42.553

96.41

0.41
  comA Streptococcus pneumoniae D39

42.553

96.41

0.41
  comA/nlmT Streptococcus mutans UA159

41.799

96.923

0.405
  comA Streptococcus pneumoniae TIGR4

42.021

96.41

0.405