Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   STT55_RS03570 Genome accession   NZ_CP065502
Coordinates   660471..662624 (-) Length   717 a.a.
NCBI ID   WP_024404830.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST55     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 651038..712443 660471..662624 within 0


Gene organization within MGE regions


Location: 651038..712443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STT55_RS03520 (STT55_03485) - 651314..652729 (+) 1416 WP_010730302.1 HEPN domain-containing protein -
  STT55_RS03525 (STT55_03490) - 653235..653597 (+) 363 WP_039671040.1 SAG1252 family conjugative relaxosome accessory protein -
  STT55_RS03530 (STT55_03495) mobC 653600..653965 (+) 366 WP_039671039.1 plasmid mobilization relaxosome protein MobC -
  STT55_RS03535 (STT55_03500) - 653952..655835 (+) 1884 WP_173940477.1 SAG1250 family conjugative relaxase -
  STT55_RS03540 - 655768..656163 (-) 396 WP_232085807.1 hypothetical protein -
  STT55_RS03545 (STT55_03510) - 656362..656703 (+) 342 WP_024404826.1 LytTR family DNA-binding domain-containing protein -
  STT55_RS03550 (STT55_03515) comE/blpR 656705..657445 (+) 741 WP_173940476.1 response regulator transcription factor Regulator
  STT55_RS03555 (STT55_03520) - 657456..658796 (+) 1341 WP_039671036.1 GHKL domain-containing protein -
  STT55_RS03560 (STT55_03525) - 658844..658999 (-) 156 WP_096811960.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  STT55_RS03565 (STT55_03530) - 659098..660459 (-) 1362 WP_173940475.1 bacteriocin secretion accessory protein -
  STT55_RS03570 (STT55_03535) comA/nlmT 660471..662624 (-) 2154 WP_024404830.1 peptide cleavage/export ABC transporter Regulator
  STT55_RS03575 (STT55_03540) - 662922..663179 (+) 258 WP_039671027.1 Blp family class II bacteriocin -
  STT55_RS03580 (STT55_03545) - 663196..663390 (+) 195 WP_039671026.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  STT55_RS03585 (STT55_03550) - 663993..665344 (+) 1352 WP_096811962.1 IS3 family transposase -
  STT55_RS03590 (STT55_03555) - 665765..666796 (+) 1032 WP_065973046.1 thioredoxin fold domain-containing protein -
  STT55_RS03595 (STT55_03560) - 666800..667495 (+) 696 WP_065973047.1 type II CAAX endopeptidase family protein -
  STT55_RS03600 (STT55_03565) - 667525..667677 (+) 153 WP_155758745.1 hypothetical protein -
  STT55_RS03605 (STT55_03570) - 667863..668258 (+) 396 WP_065973048.1 hypothetical protein -
  STT55_RS03610 (STT55_03575) - 668765..670561 (+) 1797 WP_173940474.1 recombinase family protein -
  STT55_RS03615 (STT55_03580) - 670763..671593 (+) 831 WP_173940473.1 GIY-YIG nuclease family protein -
  STT55_RS03620 (STT55_03585) - 671761..671982 (+) 222 WP_011680955.1 helix-turn-helix domain-containing protein -
  STT55_RS03625 (STT55_03590) - 671982..672440 (+) 459 WP_173940711.1 DNA adenine methylase -
  STT55_RS03630 (STT55_03595) - 672607..672864 (-) 258 WP_002950317.1 hypothetical protein -
  STT55_RS03635 (STT55_03600) - 673034..673645 (+) 612 WP_173940472.1 DUF2140 domain-containing protein -
  STT55_RS03640 (STT55_03605) cas9 673902..677270 (+) 3369 WP_173940471.1 type II CRISPR RNA-guided endonuclease Cas9 -
  STT55_RS03645 (STT55_03610) cas1 677447..678358 (+) 912 WP_011227029.1 type II CRISPR-associated endonuclease Cas1 -
  STT55_RS03650 (STT55_03615) cas2 678360..678683 (+) 324 WP_002946754.1 CRISPR-associated endonuclease Cas2 -
  STT55_RS03655 (STT55_03620) csn2-St 678680..679732 (+) 1053 WP_173940470.1 CRISPR-associated protein Csn2-St -
  STT55_RS03660 (STT55_03625) - 680994..681809 (-) 816 WP_173940469.1 TIGR03943 family protein -
  STT55_RS03665 (STT55_03630) - 681809..682711 (-) 903 WP_173940468.1 permease -
  STT55_RS03670 - 682717..682848 (-) 132 WP_002952698.1 SPJ_0845 family protein -
  STT55_RS03675 (STT55_03635) - 683075..685207 (+) 2133 WP_173940467.1 Tex family protein -
  STT55_RS03680 (STT55_03640) - 685194..685634 (+) 441 WP_002946099.1 SprT family protein -
  STT55_RS03685 (STT55_03645) - 685700..685963 (+) 264 WP_011225732.1 PspC domain-containing protein -
  STT55_RS03690 (STT55_03650) hprK 686092..687021 (+) 930 WP_173940466.1 HPr(Ser) kinase/phosphatase -
  STT55_RS03695 (STT55_03655) lgt 687021..687812 (+) 792 WP_011225734.1 prolipoprotein diacylglyceryl transferase -
  STT55_RS03700 (STT55_03660) - 687935..688333 (+) 399 WP_022096784.1 DUF948 domain-containing protein -
  STT55_RS03705 (STT55_03665) - 688346..688786 (+) 441 WP_173940465.1 YtxH domain-containing protein -
  STT55_RS03710 (STT55_03670) - 688807..689103 (-) 297 WP_002945999.1 DUF3270 domain-containing protein -
  STT55_RS03715 (STT55_03675) - 689336..690265 (+) 930 WP_002952720.1 peptidase U32 family protein -
  STT55_RS03720 (STT55_03680) - 690362..691648 (+) 1287 WP_002945995.1 U32 family peptidase -
  STT55_RS03725 (STT55_03685) - 691648..691967 (+) 320 Protein_673 CHY zinc finger protein -
  STT55_RS03730 (STT55_03690) - 692018..692557 (-) 540 WP_173940464.1 biotin transporter BioY -
  STT55_RS03735 (STT55_03695) - 692652..692936 (-) 285 WP_173940463.1 hypothetical protein -
  STT55_RS03740 (STT55_03700) - 693062..693274 (+) 213 WP_002886106.1 YdbC family protein -
  STT55_RS03745 (STT55_03705) - 693309..694646 (-) 1338 WP_022096788.1 Nramp family divalent metal transporter -
  STT55_RS03750 (STT55_03710) - 694842..695150 (+) 309 WP_173940462.1 hypothetical protein -
  STT55_RS03755 (STT55_03715) dcm 695189..696463 (-) 1275 WP_173940461.1 DNA (cytosine-5-)-methyltransferase -
  STT55_RS03760 (STT55_03720) - 696581..698071 (+) 1491 WP_173940710.1 Sau3AI family type II restriction endonuclease -
  STT55_RS03765 (STT55_03725) - 698303..699472 (+) 1170 WP_347229935.1 SIR2 family protein -
  STT55_RS03770 (STT55_03730) - 699459..701093 (+) 1635 WP_173940459.1 ATP-binding protein -
  STT55_RS03775 - 701189..701311 (+) 123 WP_002886098.1 hypothetical protein -
  STT55_RS03780 (STT55_03735) - 701369..702049 (+) 681 WP_254596099.1 hypothetical protein -
  STT55_RS03785 - 702050..702277 (+) 228 WP_254596098.1 hypothetical protein -
  STT55_RS03790 (STT55_03740) lysS 702504..703994 (-) 1491 WP_173940458.1 lysine--tRNA ligase -
  STT55_RS03795 (STT55_03745) - 704123..705401 (+) 1279 Protein_687 LysM peptidoglycan-binding domain-containing protein -
  STT55_RS03800 (STT55_03750) - 705415..705894 (+) 480 WP_002952755.1 hypothetical protein -
  STT55_RS03805 (STT55_03755) - 706219..707121 (+) 903 WP_011225749.1 HAD family hydrolase -
  STT55_RS03810 (STT55_03760) - 707546..708184 (-) 639 WP_173940457.1 histidine phosphatase family protein -
  STT55_RS03815 (STT55_03765) - 708187..708660 (-) 474 WP_002950328.1 aminoacyl-tRNA deacylase -
  STT55_RS03820 (STT55_03770) - 708775..709722 (-) 948 WP_014608156.1 glycoside hydrolase family 25 protein -
  STT55_RS03825 (STT55_03775) - 709914..710303 (-) 390 WP_002948103.1 hypothetical protein -
  STT55_RS03830 (STT55_03780) - 710559..711185 (-) 627 WP_173940456.1 Pr6Pr family membrane protein -
  STT55_RS03835 - 711297..711479 (+) 183 WP_011680981.1 hypothetical protein -
  STT55_RS03840 - 711533..711712 (+) 180 WP_250644924.1 Mbeg1-like protein -
  STT55_RS03845 - 711727..711822 (+) 96 WP_260224585.1 hypothetical protein -
  STT55_RS03850 (STT55_03795) - 711995..712198 (+) 204 WP_014727399.1 Mbeg1-like protein -

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80548.46 Da        Isoelectric Point: 7.1814

>NTDB_id=511253 STT55_RS03570 WP_024404830.1 660471..662624(-) (comA/nlmT) [Streptococcus thermophilus strain ST55]
MTAYKRTFVPQIDARDCGVAALASIAKFYGSDYSLAHLRELAKTNKEGTTALGIVKAAKEMGFETRAIQADMSLFDMDDV
PYPFIVHVNKEGKLQHYYVVYHNKKDHLIIGDPDPTVKVTKMTKERFASEWTGVAIFLAPEPSYKPHKDKKNGLMSFLPL
IFRQRALIFYIVLASLLVTLINIGGSYYLQGILDEYIPNQMKSTLGIISIGLIITYILQQMMSFSRDYLLTVLSQRLSID
VILSYIRHIFELPMSFFATRRTGEVISRFTDANSIIDALASTILSLFLDVSILTIVGGVLLVQNTNLFLLSLISVPIYII
IIFAFMKPFEKMNNDVMQSNSMVSSAIIEDINGIETIKSLTSEESRYQKIDSEFVDYLDKSFKLSKYSILQTTLKQGAQL
ILNIVILWFGAQLVMNGHISVGQLITFNTLLSYFTNPLENIINLQTKLQSAKVANNRLNEVYLVESEFSNSQTLTDSQFL
TGDIRFEDLSYKYGFGRDTLSDINLTIKQGDKVSLVGISGSGKTTLAKMIVNFFEPYKGRITINNNDLKLIDKKTLRQHI
NYLPQQAYIFSGSILENLTLGANQLISQEDIIRACEIAEIRQDIEQMPMGYQTELSDGAGLSGGQKQRIALARALLTKAP
VLILDEATSGLDVLTEKKVIDNLMAMADKTIIFVAHRLSISERTNQVIVLDQGKVIETGSHHELMTKQGFYHHLFSK

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=511253 STT55_RS03570 WP_024404830.1 660471..662624(-) (comA/nlmT) [Streptococcus thermophilus strain ST55]
ATGACAGCTTACAAACGAACTTTTGTTCCTCAAATCGATGCCAGAGACTGTGGTGTGGCTGCTTTAGCCTCTATTGCCAA
GTTTTATGGTTCTGATTATTCCCTAGCTCATTTGAGAGAATTGGCCAAAACCAATAAGGAAGGAACGACCGCTCTTGGTA
TCGTCAAAGCAGCCAAGGAGATGGGCTTTGAAACTAGAGCCATCCAGGCTGACATGAGCCTCTTTGATATGGATGACGTT
CCCTATCCCTTCATCGTTCACGTCAATAAAGAAGGCAAACTGCAACACTACTATGTGGTCTATCACAACAAAAAAGACCA
CCTCATCATTGGTGATCCTGACCCTACGGTCAAAGTCACCAAGATGACCAAGGAGCGGTTTGCTTCTGAATGGACAGGCG
TTGCTATCTTTCTGGCTCCAGAACCCAGCTATAAGCCTCACAAAGATAAAAAGAACGGCCTGATGAGCTTTCTCCCTCTT
ATTTTCAGGCAACGTGCGCTTATCTTTTATATCGTCTTGGCTAGCCTTTTGGTGACACTTATCAATATTGGTGGTTCTTA
CTACCTGCAAGGGATTTTGGATGAATACATTCCTAATCAAATGAAGTCAACCTTGGGGATTATCTCCATCGGCCTGATTA
TCACCTACATCCTCCAGCAGATGATGAGTTTCTCACGAGATTACCTTTTGACTGTGCTCAGCCAGCGGCTAAGCATTGAT
GTGATTCTTTCCTATATCCGTCATATCTTTGAACTGCCCATGTCCTTTTTTGCGACACGGCGGACTGGTGAGGTTATCTC
TCGCTTTACAGATGCCAATTCAATCATTGATGCCCTGGCATCGACCATTTTGTCACTCTTCCTTGATGTCTCTATTTTAA
CCATCGTCGGTGGTGTGCTTTTGGTACAAAACACCAACCTCTTCCTGCTCTCCTTGATTTCAGTTCCCATTTACATCATC
ATTATTTTTGCTTTTATGAAGCCGTTTGAGAAGATGAATAACGATGTGATGCAGAGCAATTCCATGGTCAGCTCTGCCAT
TATCGAAGACATCAACGGCATTGAAACCATCAAATCCTTGACCAGTGAAGAAAGCCGCTACCAGAAGATTGATAGCGAGT
TCGTAGATTACCTGGACAAATCCTTCAAACTCAGTAAATACTCTATCCTGCAAACTACCCTTAAACAGGGAGCTCAGCTC
ATTCTAAATATTGTCATCTTGTGGTTTGGGGCCCAACTAGTCATGAACGGACACATTTCAGTTGGACAACTGATCACCTT
CAACACCCTTCTATCTTATTTTACCAATCCTTTAGAAAATATTATAAACCTCCAAACCAAGCTCCAGTCTGCCAAGGTGG
CTAACAATCGCCTGAATGAAGTCTACCTGGTTGAATCTGAATTCAGTAACAGTCAGACCTTAACAGATTCACAGTTCCTG
ACTGGCGATATTCGCTTTGAAGACCTTTCCTATAAGTACGGTTTCGGACGTGACACCCTATCGGATATCAATCTGACCAT
CAAACAAGGCGATAAGGTCAGTCTAGTGGGAATTAGCGGCTCAGGAAAGACAACCTTGGCCAAGATGATTGTCAATTTCT
TTGAGCCTTACAAGGGTCGAATCACCATCAACAACAATGACCTTAAACTAATTGATAAAAAGACGCTTCGGCAACACATT
AACTACCTCCCACAACAAGCTTATATCTTCAGTGGTTCAATCTTAGAAAACTTGACTTTAGGGGCTAATCAACTGATTAG
TCAGGAAGATATTATCAGAGCTTGTGAGATCGCTGAAATTCGACAAGATATCGAGCAGATGCCTATGGGCTATCAAACAG
AATTGTCTGACGGAGCTGGCTTATCGGGTGGTCAAAAGCAACGGATTGCTTTGGCTAGGGCTCTACTGACTAAAGCCCCT
GTTCTTATTCTTGATGAAGCCACTAGCGGCCTTGATGTGCTAACGGAGAAAAAGGTCATTGATAATTTAATGGCCATGGC
AGACAAGACCATTATCTTTGTCGCACACCGCCTCAGTATTTCTGAGCGAACCAACCAAGTTATCGTTCTTGACCAAGGGA
AGGTCATTGAGACTGGTTCACATCACGAATTGATGACCAAACAAGGTTTCTACCATCATCTATTTAGCAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

73.986

99.721

0.738

  comA Streptococcus mitis NCTC 12261

68.495

99.163

0.679

  comA Streptococcus mitis SK321

67.932

99.163

0.674

  comA Streptococcus pneumoniae Rx1

67.792

99.163

0.672

  comA Streptococcus pneumoniae D39

67.792

99.163

0.672

  comA Streptococcus pneumoniae R6

67.792

99.163

0.672

  comA Streptococcus pneumoniae TIGR4

67.511

99.163

0.669

  comA Streptococcus gordonii str. Challis substr. CH1

65.734

99.721

0.656