Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   STAVA116_RS01590 Genome accession   NZ_CP065498
Coordinates   294048..294737 (+) Length   229 a.a.
NCBI ID   WP_002949638.1    Uniprot ID   A0A060BFD8
Organism   Streptococcus thermophilus strain AVA116     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 289048..299737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS01565 - 290014..290184 (+) 171 Protein_268 ascorbate 6-phosphate lactonase -
  STAVA116_RS01570 (STAVA116_01570) - 290201..290872 (-) 672 WP_002946492.1 TrkA family potassium uptake protein -
  STAVA116_RS01575 (STAVA116_01575) - 290912..292276 (-) 1365 WP_082302294.1 potassium transporter TrkG -
  STAVA116_RS01580 (STAVA116_01580) rsmG 292346..293059 (-) 714 WP_002949634.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  STAVA116_RS01585 (STAVA116_01585) - 293356..293892 (+) 537 WP_002949636.1 YceD family protein -
  STAVA116_RS01590 (STAVA116_01590) covR 294048..294737 (+) 690 WP_002949638.1 response regulator transcription factor Regulator
  STAVA116_RS01595 (STAVA116_01595) covS 294734..296251 (+) 1518 WP_002949640.1 HAMP domain-containing histidine kinase Regulator
  STAVA116_RS01600 (STAVA116_01600) nrdR 296373..296852 (+) 480 WP_002949642.1 transcriptional regulator NrdR -
  STAVA116_RS01605 (STAVA116_01605) - 296849..298024 (+) 1176 WP_002949643.1 DnaD domain protein -
  STAVA116_RS01610 (STAVA116_01610) dnaI 298028..298930 (+) 903 WP_002946786.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26655.77 Da        Isoelectric Point: 4.7059

>NTDB_id=511120 STAVA116_RS01590 WP_002949638.1 294048..294737(+) (covR) [Streptococcus thermophilus strain AVA116]
MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDIEATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIRER

Nucleotide


Download         Length: 690 bp        

>NTDB_id=511120 STAVA116_RS01590 WP_002949638.1 294048..294737(+) (covR) [Streptococcus thermophilus strain AVA116]
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAGAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCGGACAACGGACGCGAAGGACTTGAAATGGCACTTGAGAAAGATTTCGATCTTATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTCGAAGTGACACGTCGTCTTCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCTCGCGACTCAATCATGGATATTGTTGCTGGTTTGGATCGTGGAGCTGATGACTATATTATAAAACCATTTGCGATTGA
AGAACTGTTGGCACGTATTCGTGCAACCTTCCGTCGTCAAGATATCGAAGCTACTAAGAAGGCACCAGCTAAAGCGTCAA
CCTATCGCGATTTAAAATTGGATGTTCAAAACCGTGCAGTTGTTCGCGGTGATGAGGTAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTAAGCAATATGAACCAAGTAATGACCCGTGAGGAACTCTTGCTTCAAGTCTGGAAATA
TGATGACGTAATTGAAACAAACGTTGTAGATGTTTATATTCGTTACTTACGTGGGAAAATCGACATTCCAGGTAAGGAAT
CATACATTCAAACAGTACGAGGGATGGGTTACGTTATCCGTGAAAGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060BFD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

96.07

100

0.961
  covR Lactococcus lactis subsp. lactis strain DGCC12653

67.544

99.563

0.672
  vicR Streptococcus mutans UA159

45.259

100

0.459
  micA Streptococcus pneumoniae Cp1015

43.913

100

0.441