Detailed information NTG0051092

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: SIR_RS12595
• Genome accession: NC_022246
• Coordinates: 562481..563161 (+)
• Length: 226 a.a.
• NCBI ID: WP_003072284.1
• Uniprot ID: T1ZDF0
• Organism: Streptococcus intermedius B196
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 557481..568161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SIR_RS12570 (SIR_0556)	pstC	558263..559174 (+)	912	WP_003069509.1	phosphate ABC transporter permease subunit PstC	-
SIR_RS12575 (SIR_0557)	pstA	559164..560048 (+)	885	WP_003076526.1	phosphate ABC transporter permease PstA	-
SIR_RS12580 (SIR_0558)	pstB	560060..560863 (+)	804	WP_020998471.1	phosphate ABC transporter ATP-binding protein PstB	-
SIR_RS12585 (SIR_0559)	pstB	560903..561661 (+)	759	WP_021002580.1	phosphate ABC transporter ATP-binding protein PstB	-
SIR_RS12590 (SIR_0560)	phoU	561742..562395 (+)	654	WP_003076541.1	phosphate signaling complex protein PhoU	-
SIR_RS12595 (SIR_0561)	radC	562481..563161 (+)	681	WP_003072284.1	RadC family protein	Machinery gene
SIR_RS20340	-	563158..563794 (-)	637	Protein_538	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	-
SIR_RS12610 (SIR_0562)	-	563813..564457 (-)	645	WP_020998472.1	redox-sensing transcriptional repressor Rex	-
SIR_RS12615 (SIR_0563)	-	564638..564985 (-)	348	WP_003072290.1	DUF1831 domain-containing protein	-
SIR_RS12620 (SIR_0564)	-	564990..566105 (-)	1116	WP_020998473.1	cysteine desulfurase family protein	-
SIR_RS12625 (SIR_0565)	-	566115..567074 (-)	960	WP_096363335.1	ribose-phosphate diphosphokinase	-
SIR_RS12630 (SIR_0566)	-	567158..567718 (-)	561	WP_021002581.1	CYTH domain-containing protein	-

Sequence

Protein

• Length: 226 a.a.
• Molecular weight: 25756.79 Da
• Isoelectric Point: 6.9811

>NTDB_id=51092 SIR_RS12595 WP_003072284.1 562481..563161(+) (radC) [Streptococcus intermedius B196]
MYSISFQEDSLLPRERLVAEGAEQLSNQELLSILLRTGNKKETVFQVSQRILSTISSLNELRNMTLQELQSISGIGRIKA
IELQAMVELGQRISKAKLIMQEQILSSQKLAKKMQQELGHKKQEHLVALYLDTQNKIIHQQTIFIGSVSRSIAEPREILH
YAVKHMATSIILVHNHPSGAVLPSKNDDEVTKHVREACELMGFILLDHLIVAEKDYYSYREETELI

Nucleotide

• Length: 681 bp

>NTDB_id=51092 SIR_RS12595 WP_003072284.1 562481..563161(+) (radC) [Streptococcus intermedius B196]
ATGTATAGTATTTCATTTCAGGAAGATTCTTTATTGCCAAGAGAACGTTTGGTAGCAGAAGGTGCAGAACAATTGAGTAA
TCAAGAATTATTATCTATTCTTCTCCGAACAGGTAATAAAAAAGAAACTGTTTTTCAAGTTTCCCAACGAATTTTATCAA
CTATTTCTAGTTTAAATGAGTTACGTAATATGACGCTACAAGAACTACAATCAATCTCTGGAATTGGTCGTATCAAAGCT
ATTGAGTTGCAAGCTATGGTTGAATTAGGGCAACGAATCAGCAAGGCAAAATTGATTATGCAAGAGCAGATTTTAAGTAG
CCAAAAATTAGCGAAAAAAATGCAACAGGAATTAGGACATAAAAAACAGGAACATCTTGTTGCTTTATATCTAGACACTC
AAAATAAAATAATTCATCAACAGACTATTTTTATCGGCAGTGTGTCACGCAGTATAGCAGAACCACGTGAAATTTTGCAC
TATGCTGTGAAACATATGGCGACATCTATTATATTAGTACATAATCATCCCTCAGGAGCGGTACTACCTAGCAAAAACGA
CGATGAAGTCACCAAACATGTAAGAGAAGCATGTGAGCTAATGGGCTTCATCTTACTGGATCATCTCATCGTCGCTGAGA
AAGATTATTATAGTTATCGAGAAGAAACAGAATTGATTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (106-222)

• UPF0758 N-terminal (UPF0758_N) (13-81)

3D structure

• AlphaFold DB: T1ZDF0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Streptococcus gordonii str. Challis substr. CH1	78.319	100	0.783
radC	Streptococcus pneumoniae TIGR4	76.106	100	0.761
radC	Streptococcus pneumoniae R6	75.664	100	0.757
radC	Streptococcus pneumoniae D39	75.664	100	0.757
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	46.479	94.248	0.438
radC	Haemophilus influenzae Rd KW20	37.788	96.018	0.363