Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STMM20_RS03095 Genome accession   NZ_CP065485
Coordinates   586441..588411 (+) Length   656 a.a.
NCBI ID   WP_347103621.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM20     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 581441..593411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM20_RS03070 (STMM20_03060) - 582355..583669 (+) 1315 Protein_566 IS3 family transposase -
  STMM20_RS03075 (STMM20_03065) - 583715..584920 (-) 1206 WP_347103620.1 OFA family MFS transporter -
  STMM20_RS03080 (STMM20_03070) - 585267..585627 (+) 361 Protein_568 TatD family hydrolase -
  STMM20_RS03085 - 585622..586023 (+) 402 Protein_569 ABC transporter ATP-binding protein -
  STMM20_RS03090 (STMM20_03085) - 586017..586207 (+) 191 Protein_570 IS3 family transposase -
  STMM20_RS03095 (STMM20_03090) amiA3 586441..588411 (+) 1971 WP_347103621.1 peptide ABC transporter substrate-binding protein Regulator
  STMM20_RS03100 (STMM20_03095) amiC 588472..589965 (+) 1494 WP_064355564.1 ABC transporter permease Regulator
  STMM20_RS03105 (STMM20_03100) amiD 589965..590891 (+) 927 WP_084828982.1 oligopeptide ABC transporter permease OppC Regulator
  STMM20_RS03110 (STMM20_03105) amiE 590901..591986 (+) 1086 WP_084828981.1 ABC transporter ATP-binding protein Regulator
  STMM20_RS03115 (STMM20_03110) amiF 591979..592908 (+) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72204.11 Da        Isoelectric Point: 4.9751

>NTDB_id=510473 STMM20_RS03095 WP_347103621.1 586441..588411(+) (amiA3) [Streptococcus thermophilus strain MM20]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTEPGASTLAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALQADGVQFPVHLDLPVNQSSKLNVAQAQSLKQTIEKSLGSENVVIDINQLSSDDLEN
ATVNAANAAAEDWDISNSVAWAPDYQDPSTYLDIFKTTSSENTKDFMGYDDPNNAAAAQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASIQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=510473 STMM20_RS03095 WP_347103621.1 586441..588411(+) (amiA3) [Streptococcus thermophilus strain MM20]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGGACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAGAAGAAATATAAAGATAATATTTTTT
ACACAGAACCAGGTGCATCTACATTGGCTATTGGTGTAAACATTGACCGTCAAAGCTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTTCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCCTATCAATCACAAGTAAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGCAGA
TGGTGTTCAATTCCCAGTTCATTTGGACCTTCCAGTTAACCAAAGCTCTAAACTTAATGTTGCCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAAAAT
GCAACAGTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATAGTGTCGCTTGGGCGCCAGATTACCAAGA
TCCATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAACACTAAGGATTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGCCCAAGTGGGACTCAAAGACTATGATGCCTTGCTGAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTACGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGACACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAGACTACT
TCAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

96.956

100

0.971
  amiA3 Streptococcus thermophilus LMG 18311

96.651

100

0.968
  amiA Streptococcus salivarius strain HSISS4

91.616

100

0.916