Detailed information NTG0510475

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: STMM20_RS03105
• Genome accession: NZ_CP065485
• Coordinates: 589965..590891 (+)
• Length: 308 a.a.
• NCBI ID: WP_084828982.1
• Uniprot ID: A0A0E2Q2N6
• Organism: Streptococcus thermophilus strain MM20
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 584965..595891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STMM20_RS03080 (STMM20_03070)	-	585267..585627 (+)	361	Protein_568	TatD family hydrolase	-
STMM20_RS03085	-	585622..586023 (+)	402	Protein_569	ABC transporter ATP-binding protein	-
STMM20_RS03090 (STMM20_03085)	-	586017..586207 (+)	191	Protein_570	IS3 family transposase	-
STMM20_RS03095 (STMM20_03090)	amiA3	586441..588411 (+)	1971	WP_347103621.1	peptide ABC transporter substrate-binding protein	Regulator
STMM20_RS03100 (STMM20_03095)	amiC	588472..589965 (+)	1494	WP_064355564.1	ABC transporter permease	Regulator
STMM20_RS03105 (STMM20_03100)	amiD	589965..590891 (+)	927	WP_084828982.1	oligopeptide ABC transporter permease OppC	Regulator
STMM20_RS03110 (STMM20_03105)	amiE	590901..591986 (+)	1086	WP_084828981.1	ABC transporter ATP-binding protein	Regulator
STMM20_RS03115 (STMM20_03110)	amiF	591979..592908 (+)	930	WP_002951426.1	ATP-binding cassette domain-containing protein	Regulator
STMM20_RS03120 (STMM20_03115)	-	592958..593743 (-)	786	WP_347103622.1	ABC transporter permease	-
STMM20_RS03125 (STMM20_03120)	-	593755..594453 (-)	699	WP_113870321.1	ABC transporter ATP-binding protein	-
STMM20_RS03130 (STMM20_03125)	-	594458..594835 (-)	378	WP_011681413.1	GntR family transcriptional regulator	-
STMM20_RS03135 (STMM20_03130)	-	595020..595814 (+)	795	WP_011681412.1	HAD family hydrolase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34664.83 Da
• Isoelectric Point: 9.7054

>NTDB_id=510475 STMM20_RS03105 WP_084828982.1 589965..590891(+) (amiD) [Streptococcus thermophilus strain MM20]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIIGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=510475 STMM20_RS03105 WP_084828982.1 589965..590891(+) (amiD) [Streptococcus thermophilus strain MM20]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTGCTATTG
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTTTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATTGGTATTGCCTACAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAATGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCTCTCTTTATTA
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterProScan.

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	99.026	100	0.99
amiD	Streptococcus thermophilus LMD-9	99.026	100	0.99
amiD	Streptococcus salivarius strain HSISS4	96.104	100	0.961