Detailed information NTG0510388

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: STCNRZ1151_RS08705
• Genome accession: NZ_CP065483
• Coordinates: 1655340..1655768 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CNRZ1151
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1650340..1660768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STCNRZ1151_RS08665 (STCNRZ1151_08610)	-	1650473..1650921 (-)	449	Protein_1635	CAAX protease	-
STCNRZ1151_RS08670	-	1650995..1651420 (-)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
STCNRZ1151_RS08675 (STCNRZ1151_08620)	-	1651663..1651860 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
STCNRZ1151_RS08680 (STCNRZ1151_08625)	-	1652109..1653302 (-)	1194	WP_022096898.1	acetate kinase	-
STCNRZ1151_RS08685 (STCNRZ1151_08630)	comYH	1653358..1654314 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
STCNRZ1151_RS08690 (STCNRZ1151_08635)	comGG	1654359..1654676 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
STCNRZ1151_RS08695 (STCNRZ1151_08640)	comYF	1654654..1655091 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
STCNRZ1151_RS08700 (STCNRZ1151_08645)	comGE	1655075..1655368 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STCNRZ1151_RS08705 (STCNRZ1151_08650)	comYD	1655340..1655768 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STCNRZ1151_RS08710 (STCNRZ1151_08655)	comYC	1655728..1656054 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STCNRZ1151_RS08715 (STCNRZ1151_08660)	comYB	1656051..1657151 (-)	1101	WP_148148900.1	competence type IV pilus assembly protein ComGB	Machinery gene
STCNRZ1151_RS08720 (STCNRZ1151_08665)	comGA/cglA/cilD	1657033..1657974 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
STCNRZ1151_RS08725 (STCNRZ1151_08670)	-	1658055..1658417 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=510388 STCNRZ1151_RS08705 WP_011226626.1 1655340..1655768(-) (comYD) [Streptococcus thermophilus strain CNRZ1151]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=510388 STCNRZ1151_RS08705 WP_011226626.1 1655340..1655768(-) (comYD) [Streptococcus thermophilus strain CNRZ1151]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38