Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7C_RS10475 Genome accession   NC_017856
Coordinates   2177473..2177946 (-) Length   157 a.a.
NCBI ID   WP_014704739.1    Uniprot ID   I1YK77
Organism   Methylophaga frappieri     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2172473..2182946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C_RS10450 (Q7C_2178) - 2172703..2174253 (+) 1551 WP_014704733.1 AmpG family muropeptide MFS transporter -
  Q7C_RS10455 (Q7C_2179) ppnN 2174257..2175621 (-) 1365 WP_014704734.1 nucleotide 5'-monophosphate nucleosidase PpnN -
  Q7C_RS10460 (Q7C_2181) - 2175843..2176511 (+) 669 WP_014704736.1 epoxyqueuosine reductase QueH -
  Q7C_RS10465 (Q7C_2182) - 2176609..2176806 (-) 198 WP_014704737.1 helix-turn-helix transcriptional regulator -
  Q7C_RS10470 - 2176803..2177225 (-) 423 WP_041366701.1 hypothetical protein -
  Q7C_RS10475 (Q7C_2184) ssb 2177473..2177946 (-) 474 WP_014704739.1 single-stranded DNA-binding protein Machinery gene
  Q7C_RS10480 (Q7C_2185) - 2177989..2179365 (-) 1377 WP_041367129.1 MFS transporter -
  Q7C_RS10485 (Q7C_2186) uvrA 2179470..2182235 (+) 2766 WP_420795002.1 excinuclease ABC subunit UvrA -
  Q7C_RS10490 (Q7C_2187) - 2182232..2182849 (+) 618 WP_014704742.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17512.12 Da        Isoelectric Point: 4.9923

>NTDB_id=51038 Q7C_RS10475 WP_014704739.1 2177473..2177946(-) (ssb) [Methylophaga frappieri]
MSVNKVILVGRLGVDPESRAFPNGGSICNLRIATTESWRDRQSGERQERTEWHRVVLRNKLGEIAQQYLRKGSQVYIEGR
IQTRKWQDQNGQDRYTTEIVGNEMTMLDSKGGSGGDSSYDQPRPAQNNAPSGQPASATAGPDYGGNNDDFYDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=51038 Q7C_RS10475 WP_014704739.1 2177473..2177946(-) (ssb) [Methylophaga frappieri]
ATGTCTGTAAATAAAGTAATTCTGGTCGGCCGACTCGGTGTTGATCCTGAAAGCCGGGCATTTCCAAATGGCGGCTCAAT
CTGCAACCTGCGAATTGCCACAACCGAATCATGGCGTGACAGACAATCGGGAGAGCGTCAGGAACGCACCGAATGGCATC
GCGTTGTATTGCGTAACAAACTTGGCGAAATCGCCCAACAATATCTGCGCAAAGGCAGCCAAGTATATATCGAAGGCCGT
ATTCAAACCCGTAAATGGCAAGATCAGAATGGCCAAGACCGCTACACAACGGAAATCGTTGGTAATGAAATGACCATGTT
GGATAGCAAAGGCGGTAGTGGCGGCGACAGCAGTTATGATCAACCCCGTCCGGCGCAAAATAACGCGCCAAGTGGCCAAC
CCGCTTCAGCCACAGCCGGCCCCGATTACGGCGGTAATAATGACGATTTTTATGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1YK77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.457

100

0.58
  ssb Vibrio cholerae strain A1552

51.445

100

0.567
  ssb Neisseria meningitidis MC58

46.286

100

0.516
  ssb Neisseria gonorrhoeae MS11

45.143

100

0.503

Multiple sequence alignment