Detailed information NTG0510337

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: STCNRZ760_RS09060
• Genome accession: NZ_CP065482
• Coordinates: 1733675..1734775 (-)
• Length: 366 a.a.
• NCBI ID: WP_116920398.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain CNRZ760
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1728675..1739775

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STCNRZ760_RS09015	-	1729000..1729275 (-)	276	WP_011681681.1	hypothetical protein	-
STCNRZ760_RS09020 (STCNRZ760_08950)	-	1729287..1729484 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
STCNRZ760_RS09025 (STCNRZ760_08955)	-	1729733..1730926 (-)	1194	WP_096811682.1	acetate kinase	-
STCNRZ760_RS09030 (STCNRZ760_08960)	comYH	1730982..1731938 (-)	957	WP_180481126.1	class I SAM-dependent methyltransferase	Machinery gene
STCNRZ760_RS09035 (STCNRZ760_08965)	comGG	1731983..1732300 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
STCNRZ760_RS09040 (STCNRZ760_08970)	comYF	1732278..1732715 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
STCNRZ760_RS09045 (STCNRZ760_08975)	comGE	1732699..1732992 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
STCNRZ760_RS09050 (STCNRZ760_08980)	comYD	1732964..1733392 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
STCNRZ760_RS09055 (STCNRZ760_08985)	comYC	1733352..1733678 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
STCNRZ760_RS09060 (STCNRZ760_08990)	comYB	1733675..1734775 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
STCNRZ760_RS09065 (STCNRZ760_08995)	comGA/cglA/cilD	1734657..1735598 (-)	942	WP_022096896.1	competence type IV pilus ATPase ComGA	Machinery gene
STCNRZ760_RS09070 (STCNRZ760_09000)	-	1735679..1736041 (-)	363	WP_180481127.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41797.91 Da
• Isoelectric Point: 10.1084

>NTDB_id=510337 STCNRZ760_RS09060 WP_116920398.1 1733675..1734775(-) (comYB) [Streptococcus thermophilus strain CNRZ760]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=510337 STCNRZ760_RS09060 WP_116920398.1 1733675..1734775(-) (comYB) [Streptococcus thermophilus strain CNRZ760]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCTAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413