Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   STCNRZ760_RS09040 Genome accession   NZ_CP065482
Coordinates   1732278..1732715 (-) Length   145 a.a.
NCBI ID   WP_011681686.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ760     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1727278..1737715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ760_RS09000 (STCNRZ760_08935) - 1727342..1728004 (-) 663 WP_180481124.1 type II CAAX endopeptidase family protein -
  STCNRZ760_RS09005 (STCNRZ760_08940) - 1728101..1728544 (-) 444 WP_180481125.1 CAAX protease -
  STCNRZ760_RS09010 - 1728618..1728956 (-) 339 WP_224103672.1 CPBP family intramembrane glutamic endopeptidase -
  STCNRZ760_RS09015 - 1729000..1729275 (-) 276 WP_011681681.1 hypothetical protein -
  STCNRZ760_RS09020 (STCNRZ760_08950) - 1729287..1729484 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  STCNRZ760_RS09025 (STCNRZ760_08955) - 1729733..1730926 (-) 1194 WP_096811682.1 acetate kinase -
  STCNRZ760_RS09030 (STCNRZ760_08960) comYH 1730982..1731938 (-) 957 WP_180481126.1 class I SAM-dependent methyltransferase Machinery gene
  STCNRZ760_RS09035 (STCNRZ760_08965) comGG 1731983..1732300 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STCNRZ760_RS09040 (STCNRZ760_08970) comYF 1732278..1732715 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  STCNRZ760_RS09045 (STCNRZ760_08975) comGE 1732699..1732992 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STCNRZ760_RS09050 (STCNRZ760_08980) comYD 1732964..1733392 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STCNRZ760_RS09055 (STCNRZ760_08985) comYC 1733352..1733678 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STCNRZ760_RS09060 (STCNRZ760_08990) comYB 1733675..1734775 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  STCNRZ760_RS09065 (STCNRZ760_08995) comGA/cglA/cilD 1734657..1735598 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  STCNRZ760_RS09070 (STCNRZ760_09000) - 1735679..1736041 (-) 363 WP_180481127.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16375.85 Da        Isoelectric Point: 8.4500

>NTDB_id=510334 STCNRZ760_RS09040 WP_011681686.1 1732278..1732715(-) (comYF) [Streptococcus thermophilus strain CNRZ760]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide


Download         Length: 438 bp        

>NTDB_id=510334 STCNRZ760_RS09040 WP_011681686.1 1732278..1732715(-) (comYF) [Streptococcus thermophilus strain CNRZ760]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTTAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(39-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

58.156

97.241

0.566
  comYF Streptococcus mutans UA159

57.447

97.241

0.559
  comGF/cglF Streptococcus pneumoniae D39

49.286

96.552

0.476
  comGF/cglF Streptococcus pneumoniae Rx1

49.286

96.552

0.476
  comGF/cglF Streptococcus pneumoniae R6

49.286

96.552

0.476
  comGF/cglF Streptococcus pneumoniae TIGR4

49.286

96.552

0.476
  comGF/cglF Streptococcus mitis NCTC 12261

47.518

97.241

0.462
  comGF/cglF Streptococcus mitis SK321

46.809

97.241

0.455
  comGF Lactococcus lactis subsp. cremoris KW2

45.324

95.862

0.434