Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q7C_RS05355 Genome accession   NC_017856
Coordinates   1151533..1153035 (-) Length   500 a.a.
NCBI ID   WP_014703697.1    Uniprot ID   I1YH84
Organism   Methylophaga frappieri     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1146533..1158035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7C_RS05325 (Q7C_1116) - 1147093..1147590 (+) 498 WP_041366566.1 Na+/H+ antiporter subunit E -
  Q7C_RS05330 (Q7C_1117) - 1147584..1147853 (+) 270 WP_014703692.1 K+/H+ antiporter subunit F -
  Q7C_RS05335 (Q7C_1118) - 1147856..1148179 (+) 324 WP_014703693.1 Na+/H+ antiporter subunit G -
  Q7C_RS05340 (Q7C_1119) - 1148176..1148640 (+) 465 WP_014703694.1 YaiI/YqxD family protein -
  Q7C_RS05345 (Q7C_1120) - 1148956..1149504 (-) 549 WP_014703695.1 YcnI family protein -
  Q7C_RS05350 (Q7C_1121) rep 1149516..1151528 (-) 2013 WP_014703696.1 DNA helicase Rep -
  Q7C_RS05355 (Q7C_1122) comM 1151533..1153035 (-) 1503 WP_014703697.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q7C_RS05360 (Q7C_1123) - 1153220..1154383 (+) 1164 WP_014703698.1 DUF481 domain-containing protein -
  Q7C_RS05365 (Q7C_1124) - 1154675..1154989 (-) 315 WP_014703699.1 pyrimidine/purine nucleoside phosphorylase -
  Q7C_RS05370 (Q7C_1125) - 1155045..1155743 (-) 699 WP_014703700.1 hypothetical protein -
  Q7C_RS05375 (Q7C_1126) ubiK 1155766..1156020 (-) 255 WP_014703701.1 ubiquinone biosynthesis accessory factor UbiK -
  Q7C_RS13295 (Q7C_1127) - 1156145..1156570 (+) 426 WP_014703702.1 YhcB family protein -
  Q7C_RS05385 (Q7C_1128) - 1156572..1158026 (-) 1455 WP_014703703.1 helicase HerA-like domain-containing protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53871.97 Da        Isoelectric Point: 7.0815

>NTDB_id=51029 Q7C_RS05355 WP_014703697.1 1151533..1153035(-) (comM) [Methylophaga frappieri]
MTLATIHSRALAGIDAPPVTIEVHLSNGLPSLSIVGMPETAVRESRDRVRSAIINGRFQFPQQRITINLAPADLPKEGGR
FDLPIALGILAASGQIPDERLLAIEFIGELSLTGELRPVRGVLPTLLATAKAGRELLLPAANVAEAALTQQAKSYVAADL
LSVCAFLHGQQSLPENDVIQSQVEPDYADMRDVRGQPGARRALEIAAAGGHSLLFCGPPGTGKTMLATRLPGILPPMTDA
EALASAAIQSITGNGFEVGRWRQRPFRSPHHTASGVALVGGGSQPKPGEISLAHQGVLFLDELPEFDRRVLEVLREPIES
GVIMVSRAANQAEFPAEFQLVAAMNPCPCGYLGQSRCHCSAEQVRRYRAKISGPLLDRLDILLEVPPVEHRLLRLADDEP
MPEPSERIRQRVIAARAHQLARGGQINARLTQNKMAEFCRLSDADAALLEQAIAKLGLSARAYHRIIKVARTIADLADSD
AILTTHLTEAIGYRRLDTVS

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=51029 Q7C_RS05355 WP_014703697.1 1151533..1153035(-) (comM) [Methylophaga frappieri]
ATGACGCTTGCAACAATACATAGTCGGGCGCTGGCAGGCATTGATGCACCGCCAGTGACTATCGAGGTACATTTATCAAA
CGGTTTGCCCTCGCTATCGATTGTCGGTATGCCAGAAACCGCCGTTCGGGAAAGTCGCGATAGGGTGAGATCGGCGATTA
TTAATGGTCGGTTTCAATTTCCCCAACAGCGCATCACTATCAATCTCGCACCAGCGGATTTACCAAAAGAGGGCGGACGG
TTTGATTTACCGATTGCACTCGGTATTCTCGCTGCATCTGGGCAAATCCCTGACGAACGACTGTTGGCAATAGAGTTCAT
CGGTGAGTTAAGTTTGACCGGCGAGTTAAGGCCAGTCAGAGGCGTTTTGCCGACGTTGTTGGCAACGGCAAAGGCGGGAC
GAGAATTGTTATTACCGGCAGCCAATGTGGCAGAAGCGGCTCTGACGCAACAGGCCAAAAGTTATGTGGCCGCTGATCTG
TTGTCTGTGTGTGCTTTTTTACATGGTCAGCAAAGCTTGCCAGAAAATGACGTGATTCAGTCTCAGGTTGAGCCGGATTA
CGCCGACATGCGCGATGTGCGTGGACAACCCGGCGCACGTCGCGCATTGGAAATCGCCGCGGCGGGGGGACACAGCTTGT
TATTTTGTGGACCACCGGGGACAGGAAAAACCATGTTGGCTACTCGGCTGCCGGGGATTTTACCCCCCATGACAGACGCT
GAAGCCTTGGCTAGTGCAGCCATTCAATCCATCACCGGAAACGGTTTTGAGGTTGGTCGCTGGCGTCAGCGTCCATTTCG
TTCACCGCATCATACCGCCTCAGGCGTTGCCTTGGTTGGGGGTGGCAGTCAGCCAAAACCTGGCGAGATATCTTTGGCAC
ATCAAGGCGTATTATTTCTAGATGAGTTACCCGAGTTTGATCGGCGGGTACTGGAAGTATTACGAGAACCCATCGAGTCC
GGAGTCATTATGGTGTCCAGAGCCGCCAATCAAGCGGAATTTCCCGCCGAATTTCAACTGGTTGCCGCGATGAATCCGTG
TCCCTGTGGTTATCTTGGTCAGTCCCGATGTCATTGTAGCGCTGAGCAGGTACGTCGATACCGTGCTAAAATCTCCGGCC
CTTTGCTGGATAGGTTAGATATTTTATTGGAAGTGCCGCCAGTCGAGCATCGATTATTGCGTCTGGCAGATGATGAGCCA
ATGCCTGAGCCTAGTGAGCGAATTCGCCAGCGCGTCATTGCCGCGAGAGCACATCAGCTCGCACGCGGCGGGCAAATAAA
TGCGCGTCTGACTCAAAATAAAATGGCAGAATTTTGCCGATTAAGTGATGCCGACGCAGCATTATTGGAACAAGCGATTG
CTAAACTTGGACTATCAGCACGTGCCTATCATCGAATCATTAAAGTGGCGCGAACCATTGCCGATCTGGCTGACAGCGAT
GCTATTTTGACAACACACCTGACCGAAGCGATTGGCTATCGGCGATTGGATACGGTTTCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I1YH84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.689

100

0.558
  comM Glaesserella parasuis strain SC1401

54.653

100

0.552
  comM Vibrio campbellii strain DS40M4

54.819

99.6

0.546
  comM Haemophilus influenzae Rd KW20

53.707

99.8

0.536
  comM Legionella pneumophila str. Paris

51.297

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.297

100

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.957

100

0.466

Multiple sequence alignment