Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   ST90729_RS01650 Genome accession   NZ_CP065480
Coordinates   299959..300648 (+) Length   229 a.a.
NCBI ID   WP_002949638.1    Uniprot ID   A0A060BFD8
Organism   Streptococcus thermophilus strain 90729     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 294959..305648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS01625 - 295925..296095 (+) 171 Protein_267 ascorbate 6-phosphate lactonase -
  ST90729_RS01630 (ST90729_01635) - 296112..296783 (-) 672 WP_002946492.1 TrkA family potassium uptake protein -
  ST90729_RS01635 (ST90729_01640) - 296823..298187 (-) 1365 WP_014727321.1 potassium transporter TrkG -
  ST90729_RS01640 (ST90729_01645) rsmG 298257..298970 (-) 714 WP_138496718.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  ST90729_RS01645 (ST90729_01650) - 299267..299803 (+) 537 WP_002946488.1 YceD family protein -
  ST90729_RS01650 (ST90729_01655) covR 299959..300648 (+) 690 WP_002949638.1 response regulator transcription factor Regulator
  ST90729_RS01655 (ST90729_01660) covS 300645..302162 (+) 1518 WP_173940561.1 HAMP domain-containing histidine kinase Regulator
  ST90729_RS01660 (ST90729_01665) nrdR 302284..302763 (+) 480 WP_002949642.1 transcriptional regulator NrdR -
  ST90729_RS01665 (ST90729_01670) - 302760..303935 (+) 1176 WP_347116689.1 DnaD domain protein -
  ST90729_RS01670 (ST90729_01675) dnaI 303939..304841 (+) 903 WP_002946786.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26655.77 Da        Isoelectric Point: 4.7059

>NTDB_id=510172 ST90729_RS01650 WP_002949638.1 299959..300648(+) (covR) [Streptococcus thermophilus strain 90729]
MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDIEATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIRER

Nucleotide


Download         Length: 690 bp        

>NTDB_id=510172 ST90729_RS01650 WP_002949638.1 299959..300648(+) (covR) [Streptococcus thermophilus strain 90729]
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAGAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCGGACAACGGACGCGAAGGACTTGAAATGGCACTTGAGAAAGATTTCGATCTTATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTCGAAGTGACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCTCGCGACTCAATCATGGATATTGTTGCTGGTTTGGATCGTGGAGCTGATGACTATATTATAAAACCATTTGCGATTGA
AGAACTGTTGGCACGTATTCGTGCAACCTTCCGTCGTCAAGATATCGAAGCTACTAAGAAGGCACCAGCTAAAGCGTCAA
CCTATCGCGATTTAAAATTGGATGTTCAAAACCGTGCAGTTGTTCGCGGTGATGAGGTAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTAAGCAATATGAACCAAGTAATGACCCGTGAGGAACTCTTGCTTCAAGTCTGGAAATA
TGATGACGTAATTGAAACAAACGTTGTAGATGTTTATATTCGTTACTTACGTGGGAAAATCGACATTCCAGGTAAGGAAT
CATACATTCAAACAGTACGAGGGATGGGTTACGTTATCCGTGAAAGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060BFD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

96.07

100

0.961
  covR Lactococcus lactis subsp. lactis strain DGCC12653

67.544

99.563

0.672
  vicR Streptococcus mutans UA159

45.259

100

0.459
  micA Streptococcus pneumoniae Cp1015

43.913

100

0.441