Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ST90728_RS09695 Genome accession   NZ_CP065479
Coordinates   1869831..1871066 (+) Length   411 a.a.
NCBI ID   WP_180478317.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1864831..1876066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS09665 (ST90728_09690) - 1865298..1867904 (+) 2607 WP_347114164.1 YfhO family protein -
  ST90728_RS09685 (ST90728_09710) - 1868449..1869132 (-) 684 WP_011226711.1 YoaK family protein -
  ST90728_RS09690 (ST90728_09715) rlmH 1869148..1869627 (-) 480 WP_002952297.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ST90728_RS09695 (ST90728_09720) htrA 1869831..1871066 (+) 1236 WP_180478317.1 trypsin-like peptidase domain-containing protein Regulator
  ST90728_RS09700 (ST90728_09725) spo0J 1871132..1871899 (+) 768 WP_002952299.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42886.21 Da        Isoelectric Point: 4.7654

>NTDB_id=510156 ST90728_RS09695 WP_180478317.1 1869831..1871066(+) (htrA) [Streptococcus thermophilus strain 90728]
MKKFNWKKIVAPIIMLVIGLLGGLLGAFILLTAAGVSFTNTTDTGVKTAKTVYTNITDTTKAVKKVQNAVVSVINYQEGS
SSDSLNDLYGRIFGGGDSSDSSQENSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVNGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKITTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTITMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISIADLNSLS
SSATSKLDLPDEVKSGVVVGSVQKGMPADGKLQEYDVITEIDGKKISSKTDIQTNLYSHSIGDTIKVTFYRGKDKKTVDL
KLTKSTEDISD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=510156 ST90728_RS09695 WP_180478317.1 1869831..1871066(+) (htrA) [Streptococcus thermophilus strain 90728]
ATGAAAAAATTTAACTGGAAAAAAATAGTCGCGCCAATTATAATGCTAGTTATTGGCTTACTAGGTGGTTTACTTGGTGC
CTTTATCCTACTAACAGCAGCCGGAGTATCTTTTACCAATACAACAGATACTGGAGTAAAAACGGCTAAGACCGTCTACA
CCAATATAACAGATACAACTAAGGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTATCAAGAAGGTTCA
TCTTCAGATTCTCTAAATGACCTTTATGGCCGTATCTTTGGCGGAGGGGACAGTTCTGATTCTAGCCAAGAAAATTCAAA
AGATTCAGATGGTCTGCAGGTCGCTGGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGCAAAGAAGCCTATATCGTAA
CCAATAACCACGTTGTCAATGGGGCTAAAAAACTTGAAATCATGCTTTCGGATGGTTCGAAAATTACTGGTGAACTTGTT
GGTAAAGACACTTACTCTGACCTAGCAGTTGTCAAAGTATCTTCAGATAAAATAACAACTGTTGCAGAATTTGCAGACTC
AAACTCCCTTACTGTTGGTGAAAAAGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAAG
GAATCGTTTCTAGCCTTAGCCGTACTATAACGATGCAAAACGATAATGGTGAAACTGTATCAACAAACGCTATCCAAACA
GATGCAGCCATTAACCCTGGTAACTCTGGTGGTGCCCTAGTCAATATTGAAGGACAAGTTATCGGTATTAATTCAAGTAA
AATTTCATCAACGTCTGCAGTCGCTGGTAGTGCTGTTGAAGGTATGGGGTTTGCCATTCCATCAAACGATGTTGTTGAAA
TCATCAATCAATTAGAAAAAGATGGTAAAGTTACACGACCAGCACTAGGGATCTCAATAGCAGATCTTAATAGCCTTTCT
AGCAGCGCAACTTCTAAATTAGATTTACCAGATGAGGTCAAATCCGGTGTTGTTGTCGGTAGTGTTCAGAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAATATGATGTTATCACTGAGATTGATGGTAAGAAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATTGGAGATACTATCAAGGTAACCTTCTATCGTGGTAAAGATAAGAAAACTGTAGATCTT
AAATTAACAAAATCTACAGAAGACATATCTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

59.854

100

0.599

  htrA Streptococcus gordonii str. Challis substr. CH1

57.767

100

0.579

  htrA Streptococcus mitis NCTC 12261

54.279

99.513

0.54

  htrA Streptococcus pneumoniae TIGR4

54.034

99.513

0.538

  htrA Streptococcus pneumoniae D39

54.034

99.513

0.538

  htrA Streptococcus pneumoniae Rx1

54.034

99.513

0.538

  htrA Streptococcus pneumoniae R6

54.034

99.513

0.538