Detailed information NTG0510154

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: ST90728_RS08960
• Genome accession: NZ_CP065479
• Coordinates: 1733760..1734860 (-)
• Length: 366 a.a.
• NCBI ID: WP_116920398.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 90728
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1728760..1739860

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST90728_RS08920 (ST90728_08900)	-	1729372..1729569 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
ST90728_RS08925 (ST90728_08905)	-	1729818..1731011 (-)	1194	WP_347114096.1	acetate kinase	-
ST90728_RS08930 (ST90728_08910)	comYH	1731067..1732023 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
ST90728_RS08935 (ST90728_08915)	comGG	1732068..1732385 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
ST90728_RS08940 (ST90728_08920)	comYF	1732363..1732800 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
ST90728_RS08945 (ST90728_08925)	comGE	1732784..1733077 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
ST90728_RS08950 (ST90728_08930)	comYD	1733049..1733477 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
ST90728_RS08955 (ST90728_08935)	comYC	1733437..1733763 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
ST90728_RS08960 (ST90728_08940)	comYB	1733760..1734860 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
ST90728_RS08965 (ST90728_08945)	comGA/cglA/cilD	1734742..1735683 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
ST90728_RS08970 (ST90728_08950)	-	1735764..1736126 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41797.91 Da
• Isoelectric Point: 10.1084

>NTDB_id=510154 ST90728_RS08960 WP_116920398.1 1733760..1734860(-) (comYB) [Streptococcus thermophilus strain 90728]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKEASLSLM
KESLIRGDRLDQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=510154 ST90728_RS08960 WP_116920398.1 1733760..1734860(-) (comYB) [Streptococcus thermophilus strain 90728]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTTATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAGCATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGGATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCAGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGATATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413