Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ST90728_RS08930 Genome accession   NZ_CP065479
Coordinates   1731067..1732023 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain 90728     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1726067..1737023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS08900 (ST90728_08880) proC 1726628..1727398 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  ST90728_RS08905 (ST90728_08885) - 1727428..1728090 (-) 663 WP_023909970.1 type II CAAX endopeptidase family protein -
  ST90728_RS08910 (ST90728_08890) - 1728187..1728630 (-) 444 WP_002946118.1 hypothetical protein -
  ST90728_RS08915 - 1728704..1729129 (-) 426 WP_096811681.1 CPBP family intramembrane glutamic endopeptidase -
  ST90728_RS08920 (ST90728_08900) - 1729372..1729569 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  ST90728_RS08925 (ST90728_08905) - 1729818..1731011 (-) 1194 WP_347114096.1 acetate kinase -
  ST90728_RS08930 (ST90728_08910) comYH 1731067..1732023 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  ST90728_RS08935 (ST90728_08915) comGG 1732068..1732385 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  ST90728_RS08940 (ST90728_08920) comYF 1732363..1732800 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  ST90728_RS08945 (ST90728_08925) comGE 1732784..1733077 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  ST90728_RS08950 (ST90728_08930) comYD 1733049..1733477 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  ST90728_RS08955 (ST90728_08935) comYC 1733437..1733763 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  ST90728_RS08960 (ST90728_08940) comYB 1733760..1734860 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  ST90728_RS08965 (ST90728_08945) comGA/cglA/cilD 1734742..1735683 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  ST90728_RS08970 (ST90728_08950) - 1735764..1736126 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=510150 ST90728_RS08930 WP_011226622.1 1731067..1732023(-) (comYH) [Streptococcus thermophilus strain 90728]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=510150 ST90728_RS08930 WP_011226622.1 1731067..1732023(-) (comYH) [Streptococcus thermophilus strain 90728]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682