Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   KU542_RS05035 Genome accession   NZ_CP077893
Coordinates   951526..952530 (+) Length   334 a.a.
NCBI ID   WP_001005767.1    Uniprot ID   Q6GG63
Organism   Staphylococcus aureus strain 332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 946526..957530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU542_RS05000 (KU542_05005) mreD 947136..947666 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  KU542_RS05005 (KU542_05010) rplU 947833..948141 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  KU542_RS05010 (KU542_05015) - 948147..948467 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  KU542_RS05015 (KU542_05020) rpmA 948479..948763 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  KU542_RS05020 (KU542_05025) obgE 949118..950410 (+) 1293 WP_000496100.1 GTPase ObgE -
  KU542_RS05025 (KU542_05030) - 950423..950878 (+) 456 WP_000368902.1 ACT domain-containing protein -
  KU542_RS05030 (KU542_05035) ruvA 950892..951494 (+) 603 WP_225806503.1 Holliday junction branch migration protein RuvA Machinery gene
  KU542_RS05035 (KU542_05040) ruvB 951526..952530 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KU542_RS05040 (KU542_05045) queA 952532..953557 (+) 1026 WP_001019182.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  KU542_RS05045 (KU542_05050) tgt 953580..954719 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  KU542_RS05050 (KU542_05055) yajC 954738..954998 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37718.00 Da        Isoelectric Point: 5.0865

>NTDB_id=510019 KU542_RS05035 WP_001005767.1 951526..952530(+) (ruvB) [Staphylococcus aureus strain 332]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=510019 KU542_RS05035 WP_001005767.1 951526..952530(+) (ruvB) [Staphylococcus aureus strain 332]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGCAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCATTTAAGATTAGAATATTATAACGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAGCGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACGAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGCGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGTGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.951

97.605

0.644
  ruvB Streptococcus pneumoniae TIGR4

58.182

98.802

0.575
  ruvB Streptococcus pneumoniae R6

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae D39

57.879

98.802

0.572
  ruvB Helicobacter pylori 26695

56.481

97.006

0.548
  ruvB Synechocystis sp. PCC 6803

53.75

95.808

0.515