Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KU542_RS05030 Genome accession   NZ_CP077893
Coordinates   950892..951494 (+) Length   200 a.a.
NCBI ID   WP_225806503.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 945892..956494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU542_RS04990 (KU542_04995) - 945975..946094 (+) 120 WP_000840602.1 hypothetical protein -
  KU542_RS04995 (KU542_05000) mreC 946294..947136 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  KU542_RS05000 (KU542_05005) mreD 947136..947666 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  KU542_RS05005 (KU542_05010) rplU 947833..948141 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  KU542_RS05010 (KU542_05015) - 948147..948467 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  KU542_RS05015 (KU542_05020) rpmA 948479..948763 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  KU542_RS05020 (KU542_05025) obgE 949118..950410 (+) 1293 WP_000496100.1 GTPase ObgE -
  KU542_RS05025 (KU542_05030) - 950423..950878 (+) 456 WP_000368902.1 ACT domain-containing protein -
  KU542_RS05030 (KU542_05035) ruvA 950892..951494 (+) 603 WP_225806503.1 Holliday junction branch migration protein RuvA Machinery gene
  KU542_RS05035 (KU542_05040) ruvB 951526..952530 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  KU542_RS05040 (KU542_05045) queA 952532..953557 (+) 1026 WP_001019182.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  KU542_RS05045 (KU542_05050) tgt 953580..954719 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  KU542_RS05050 (KU542_05055) yajC 954738..954998 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22317.54 Da        Isoelectric Point: 6.3484

>NTDB_id=510018 KU542_RS05030 WP_225806503.1 950892..951494(+) (ruvA) [Staphylococcus aureus strain 332]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSRVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=510018 KU542_RS05030 WP_225806503.1 950892..951494(+) (ruvA) [Staphylococcus aureus strain 332]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGAGGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.786

100

0.43