Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | D7S_RS08670 | Genome accession | NC_017846 |
| Coordinates | 1734535..1734864 (+) | Length | 109 a.a. |
| NCBI ID | WP_005539279.1 | Uniprot ID | - |
| Organism | Aggregatibacter actinomycetemcomitans D7S-1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1729535..1739864
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D7S_RS08655 (D7S_01854) | ileS | 1729601..1732423 (+) | 2823 | WP_005538052.1 | isoleucine--tRNA ligase | - |
| D7S_RS08660 (D7S_01855) | lspA | 1732504..1732998 (+) | 495 | WP_005538058.1 | signal peptidase II | - |
| D7S_RS08665 (D7S_01856) | ispH | 1732998..1733942 (+) | 945 | WP_005538061.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| D7S_RS08670 (D7S_01857) | comE1/comEA | 1734535..1734864 (+) | 330 | WP_005539279.1 | ComEA family DNA-binding protein | Machinery gene |
| D7S_RS08675 (D7S_01858) | rdgB | 1734977..1735570 (+) | 594 | WP_014702506.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| D7S_RS08680 (D7S_01859) | - | 1735609..1735932 (+) | 324 | WP_005539283.1 | YbjQ family protein | - |
| D7S_RS08685 (D7S_01860) | hemW | 1735932..1737101 (+) | 1170 | WP_005539285.1 | radical SAM family heme chaperone HemW | - |
| D7S_RS08690 (D7S_01861) | rpiA | 1737200..1737856 (+) | 657 | WP_005539288.1 | ribose-5-phosphate isomerase RpiA | - |
| D7S_RS08695 (D7S_01862) | serA | 1737876..1739108 (+) | 1233 | WP_005539290.1 | phosphoglycerate dehydrogenase | - |
Sequence
Protein
Download Length: 109 a.a. Molecular weight: 11355.12 Da Isoelectric Point: 9.6912
>NTDB_id=50974 D7S_RS08670 WP_005539279.1 1734535..1734864(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans D7S-1]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGVKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLDKNRDRIAL
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGVKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLDKNRDRIAL
Nucleotide
Download Length: 330 bp
>NTDB_id=50974 D7S_RS08670 WP_005539279.1 1734535..1734864(+) (comE1/comEA) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAACCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGTGAAAAAAGCGGAAGCGGTAGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAAGGCATCGGCAAAGCGACCTTAGACAAAAATCGCGACCGTAT
CGCCTTATAA
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAACCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGTGAAAAAAGCGGAAGCGGTAGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAAGGCATCGGCAAAGCGACCTTAGACAAAAATCGCGACCGTAT
CGCCTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.091 |
100 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
51.754 |
100 |
0.541 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.34 |
97.248 |
0.431 |
| comEA | Vibrio cholerae C6706 |
39.623 |
97.248 |
0.385 |
| comEA | Vibrio cholerae strain A1552 |
39.623 |
97.248 |
0.385 |