Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D7S_RS07565 Genome accession   NC_017846
Coordinates   1529324..1530859 (-) Length   511 a.a.
NCBI ID   WP_005542515.1    Uniprot ID   A0A5D0EI20
Organism   Aggregatibacter actinomycetemcomitans D7S-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1524324..1535859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7S_RS07545 (D7S_01628) - 1524373..1525056 (-) 684 WP_005542522.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  D7S_RS07550 (D7S_01629) - 1525363..1527021 (+) 1659 WP_005542520.1 phospho-sugar mutase -
  D7S_RS07555 (D7S_01630) envC 1527229..1528488 (+) 1260 WP_014702467.1 murein hydrolase activator EnvC -
  D7S_RS07560 (D7S_01631) - 1528494..1529312 (+) 819 WP_005548203.1 divergent polysaccharide deacetylase family protein -
  D7S_RS07565 (D7S_01632) comM 1529324..1530859 (-) 1536 WP_005542515.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D7S_RS07570 (D7S_01633) yihA 1530974..1531588 (-) 615 WP_005549225.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  D7S_RS07575 (D7S_01634) - 1531721..1532596 (+) 876 WP_005542511.1 VirK/YbjX family protein -
  D7S_RS07580 (D7S_01635) trmL 1532692..1533168 (-) 477 WP_005542509.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  D7S_RS07585 (D7S_01636) - 1533287..1533784 (-) 498 WP_014702468.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  D7S_RS07590 (D7S_01637) - 1533890..1534732 (-) 843 WP_005549216.1 MetQ/NlpA family lipoprotein -
  D7S_RS07595 (D7S_01638) - 1534767..1535444 (-) 678 WP_005553760.1 methionine ABC transporter permease -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56027.29 Da        Isoelectric Point: 9.3301

>NTDB_id=50968 D7S_RS07565 WP_005542515.1 1529324..1530859(-) (comM) [Aggregatibacter actinomycetemcomitans D7S-1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNAEFRYPAKRVTVNLAPADLPKEGGR
FDLPIAIGMLAASGYIDKEKLKQFEFIGELALTGQLRAVHGVIPAILAAKQAKRKCIVAQGNANEASLVSDQETYYAYSL
LEVVQFLNNQDELPLAGEIAQQSAVDFCHENPKDLTDIIGQQHAKRALMIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDQEAIETASVASLVQNELNFHNWKQRPFRAPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPAKFQLIAAMNPSPTGHYQGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
SGDRGESSATVREKVLKTRAIQLQRAGKINAHLNSKEIERDCKLTDKDAQFLENALTKLGLSVRAYHRILKVSRTIADLD
GEQHINQRHLAEALGYRAMDRLLQKLAKNSA

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=50968 D7S_RS07565 WP_005542515.1 1529324..1530859(-) (comM) [Aggregatibacter actinomycetemcomitans D7S-1]
ATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTGGTCACCATTGAAGTGCATTTAAGTAA
CGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTAC
TCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGTGGACGC
TTCGATTTACCCATTGCCATCGGTATGCTTGCCGCTTCCGGTTATATTGATAAGGAAAAACTGAAACAATTTGAATTCAT
CGGCGAGCTTGCCCTCACCGGGCAATTACGCGCAGTGCACGGCGTCATCCCCGCCATTCTGGCGGCAAAACAGGCGAAAC
GAAAATGCATTGTCGCGCAAGGGAATGCTAATGAAGCTTCACTGGTTTCCGATCAGGAAACTTATTACGCCTATTCTTTA
TTGGAAGTAGTGCAATTTCTCAATAATCAGGACGAATTACCGCTTGCCGGTGAAATAGCACAACAAAGTGCGGTGGATTT
TTGCCATGAAAATCCGAAAGATCTCACCGATATTATCGGTCAACAACACGCCAAACGGGCGCTCATGATCGCAGCCGCCG
GGCAACACAATCTGTTATTTCTCGGTCCGCCCGGCACCGGGAAAACCATGCTTGCCAGCCGTTTAACCGGATTATTACCG
GAAATGACGGATCAGGAAGCCATTGAAACCGCGTCCGTAGCAAGTTTGGTACAAAACGAACTGAATTTTCATAACTGGAA
ACAACGTCCTTTCCGTGCGCCCCATCACAGTGCTTCCACGCCGGCATTGGTGGGCGGCGGCACGATCCCCAAACCGGGCG
AAATTTCCCTCGCTCACAATGGTGTGTTATTTTTAGATGAATTGCCCGAATTTGAACGCAAAGTGCTGGACGCGCTGCGT
CAACCATTGGAAAGTGGCGAAATTATTATTTCCCGCGCCAACGCCAAGATTCAATTTCCGGCAAAATTTCAACTGATTGC
CGCGATGAACCCTAGCCCGACAGGGCATTATCAAGGCACGCATAATCGCACCTCACCACAACAAGTTATGCGTTATCTGA
ATCGTTTGTCCGGCCCTTTTTTAGATCGCTTCGATTTATCCATTGAAGTGCCCTTATTGCCACAAGGTAGCTTACAAAAT
AGCGGCGATCGTGGCGAATCCAGCGCAACGGTGCGAGAAAAAGTCCTGAAAACCCGTGCCATTCAACTTCAGCGCGCCGG
CAAAATTAATGCCCATTTAAATAGCAAAGAAATCGAACGGGACTGCAAACTAACCGACAAAGACGCACAGTTCCTGGAAA
ATGCCCTAACTAAACTGGGGCTTTCCGTACGAGCGTACCACCGCATACTGAAAGTGTCCCGCACCATTGCCGATTTAGAT
GGAGAACAACACATCAACCAGCGCCATCTGGCCGAAGCTCTGGGTTATCGGGCAATGGACAGGTTGTTGCAAAAATTAGC
GAAAAACTCGGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0EI20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

86.785

99.217

0.861
  comM Glaesserella parasuis strain SC1401

78.599

100

0.791
  comM Vibrio cholerae strain A1552

66.469

99.217

0.659
  comM Vibrio campbellii strain DS40M4

65.415

99.022

0.648
  comM Legionella pneumophila str. Paris

50.299

98.043

0.493
  comM Legionella pneumophila strain ERS1305867

50.299

98.043

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.615

100

0.472

Multiple sequence alignment