Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   I5V48_RS00760 Genome accession   NZ_CP065430
Coordinates   130457..130750 (+) Length   97 a.a.
NCBI ID   WP_043026799.1    Uniprot ID   -
Organism   Streptococcus suis strain YZDH1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125457..135750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5V48_RS00735 (I5V48_00735) - 126879..127829 (-) 951 WP_043026809.1 S66 family peptidase -
  I5V48_RS00740 (I5V48_00740) comYA 127915..128865 (+) 951 WP_043026808.1 competence type IV pilus ATPase ComGA Machinery gene
  I5V48_RS00745 (I5V48_00745) comYB 128777..129814 (+) 1038 WP_043026806.1 competence type IV pilus assembly protein ComGB Machinery gene
  I5V48_RS00750 (I5V48_00750) comYC 129816..130097 (+) 282 WP_043026803.1 competence type IV pilus major pilin ComGC Machinery gene
  I5V48_RS00755 (I5V48_00755) comGD 130078..130485 (+) 408 WP_043026801.1 competence type IV pilus minor pilin ComGD -
  I5V48_RS00760 (I5V48_00760) comYE 130457..130750 (+) 294 WP_043026799.1 competence type IV pilus minor pilin ComGE Machinery gene
  I5V48_RS00765 (I5V48_00765) comGF/cglF 130737..131171 (+) 435 WP_043026797.1 competence type IV pilus minor pilin ComGF Machinery gene
  I5V48_RS00770 (I5V48_00770) comGG 131149..131676 (+) 528 WP_043026795.1 competence type IV pilus minor pilin ComGG -
  I5V48_RS00775 (I5V48_00775) comYH 131733..132686 (+) 954 WP_043026794.1 class I SAM-dependent methyltransferase Machinery gene
  I5V48_RS00780 (I5V48_00780) - 132737..133924 (+) 1188 WP_043026792.1 acetate kinase -
  I5V48_RS00785 (I5V48_00785) - 134239..134790 (+) 552 WP_043026790.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10813.71 Da        Isoelectric Point: 9.0778

>NTDB_id=509501 I5V48_RS00760 WP_043026799.1 130457..130750(+) (comYE) [Streptococcus suis strain YZDH1]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTKQDDLALNGVAVQVQRTED
KIVVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=509501 I5V48_RS00760 WP_043026799.1 130457..130750(+) (comYE) [Streptococcus suis strain YZDH1]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATCTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACCAT
TTGTAGCTTGATTTTGTCAGCGGTGGATGCTGGTCGCAGGCGACAGGCTTGGGAATTGGAACAACAGGAAGTTCTCAATC
TGGCTCAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACAGAGGAT
AAGATTGTTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae D39

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae R6

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae TIGR4

41.304

94.845

0.392
  comGE/cglE Streptococcus mitis SK321

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis NCTC 12261

40.217

94.845

0.381