Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I5818_RS25835 Genome accession   NZ_CP065424
Coordinates   5183041..5183538 (-) Length   165 a.a.
NCBI ID   WP_058005132.1    Uniprot ID   -
Organism   Heyndrickxia oleronia strain DSM 9356     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5178041..5188538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5818_RS25815 (I5818_25830) - 5178266..5180278 (-) 2013 WP_078109468.1 methyl-accepting chemotaxis protein -
  I5818_RS25820 (I5818_25835) - 5180610..5181185 (+) 576 WP_078109467.1 sigma-70 family RNA polymerase sigma factor -
  I5818_RS25825 (I5818_25840) - 5181307..5182224 (+) 918 WP_078109471.1 hypothetical protein -
  I5818_RS25830 (I5818_25845) rpsR 5182770..5183006 (-) 237 WP_058005131.1 30S ribosomal protein S18 -
  I5818_RS25835 (I5818_25850) ssbA 5183041..5183538 (-) 498 WP_058005132.1 single-stranded DNA-binding protein Machinery gene
  I5818_RS25840 (I5818_25855) rpsF 5183601..5183888 (-) 288 WP_058005133.1 30S ribosomal protein S6 -
  I5818_RS25845 (I5818_25860) ychF 5184166..5185266 (-) 1101 WP_058005134.1 redox-regulated ATPase YchF -
  I5818_RS25850 (I5818_25865) - 5185407..5185601 (-) 195 WP_058005135.1 DUF951 domain-containing protein -
  I5818_RS25855 (I5818_25870) - 5185605..5186498 (-) 894 WP_390883598.1 mechanosensitive ion channel family protein -
  I5818_RS25860 (I5818_25875) yyaC 5186647..5187270 (+) 624 WP_058005136.1 spore protease YyaC -
  I5818_RS25865 (I5818_25880) - 5187301..5188017 (-) 717 WP_078109466.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18381.13 Da        Isoelectric Point: 4.7726

>NTDB_id=509419 I5818_RS25835 WP_058005132.1 5183041..5183538(-) (ssbA) [Heyndrickxia oleronia strain DSM 9356]
MMNRVVLVGRLTKDPDLRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVVAESVQFLEPRNSGQPRTGNNDFYGGSQGNQGNPFSQNQNQRNQGYTRVDEDPFSNDGQPIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=509419 I5818_RS25835 WP_058005132.1 5183041..5183538(-) (ssbA) [Heyndrickxia oleronia strain DSM 9356]
ATGATGAACCGAGTAGTATTAGTAGGTCGCTTAACGAAAGATCCTGATTTACGATATACTCCGAGTGGGGCTGCAGTTGC
TACATTTACTCTTGCTGTTAATCGTACATTTACGAATCAACAAGGTGAAAGAGAGGCAGATTTTATTAATTGCGTAGTGT
GGCGCAAACCTGCAGAAAATGTTGCTAACTTCTTGAAAAAGGGAAGTTTAGCGGGTGTTGATGGACGTTTGCAAACTCGT
AATTATGAAGGTCAAGATGGAAAACGTGTCTATGTTACTGAAGTTGTGGCAGAAAGCGTTCAATTCTTAGAGCCAAGAAA
TTCTGGACAACCTCGTACTGGTAATAATGATTTTTATGGCGGAAGCCAGGGAAATCAGGGTAACCCGTTTAGTCAAAATC
AGAATCAACGAAATCAAGGATATACACGAGTAGATGAAGATCCATTCTCAAATGATGGGCAACCAATTGATATTTCAGAT
GACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.832

100

0.764
  ssb Latilactobacillus sakei subsp. sakei 23K

60.92

100

0.642
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

64.242

0.412
  ssb Glaesserella parasuis strain SC1401

34.783

100

0.388
  ssb Vibrio cholerae strain A1552

34.091

100

0.364