Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I5960_RS25195 Genome accession   NZ_CP065411
Coordinates   5223555..5224088 (-) Length   177 a.a.
NCBI ID   WP_007372442.1    Uniprot ID   -
Organism   Kosakonia radicincitans strain IAC-BECa95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5218555..5229088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5960_RS25170 - 5219488..5220189 (-) 702 WP_227136182.1 IclR family transcriptional regulator -
  I5960_RS25175 - 5220564..5221259 (+) 696 WP_007372446.1 amino acid ABC transporter permease -
  I5960_RS25180 - 5221237..5222004 (+) 768 WP_007372445.1 amino acid ABC transporter ATP-binding protein -
  I5960_RS25185 - 5222029..5222802 (+) 774 WP_007372444.1 amino acid ABC transporter substrate-binding protein -
  I5960_RS25190 - 5222956..5223495 (+) 540 WP_083565939.1 chorismate mutase -
  I5960_RS25195 ssb 5223555..5224088 (-) 534 WP_007372442.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I5960_RS25200 uvrA 5224353..5227178 (+) 2826 WP_071921813.1 excinuclease ABC subunit UvrA -
  I5960_RS25205 - 5227182..5227550 (-) 369 WP_007372440.1 MmcQ/YjbR family DNA-binding protein -
  I5960_RS25210 - 5227553..5227969 (-) 417 WP_072440875.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  I5960_RS25215 aphA 5228039..5228748 (-) 710 Protein_4965 acid phosphatase AphA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18851.84 Da        Isoelectric Point: 5.2456

>NTDB_id=509268 I5960_RS25195 WP_007372442.1 5223555..5224088(-) (ssb) [Kosakonia radicincitans strain IAC-BECa95]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSSA
PAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=509268 I5960_RS25195 WP_007372442.1 5223555..5224088(-) (ssb) [Kosakonia radicincitans strain IAC-BECa95]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACAG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGTCGTCAGGGCGGCGGCGCACCGGCAGGCGGGGCAGGCGGTGGCCAGCAGCAGGGCG
GTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCTTCCGCT
CCGGCACCGTCTAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.774
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.599
  ssb Neisseria meningitidis MC58

46.927

100

0.475
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.475
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.373