Detailed information NTG0509248

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: I5961_RS27555
• Genome accession: NZ_CP065410
• Coordinates: 5990299..5991792 (+)
• Length: 497 a.a.
• NCBI ID: WP_227233889.1
• Uniprot ID: -
• Organism: Pseudomonas sp. IAC-BECa141
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 5985299..5996792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5961_RS27525 (I5961_27360)	-	5985603..5986028 (-)	426	WP_085696853.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
I5961_RS27530 (I5961_27365)	-	5986243..5987580 (-)	1338	WP_007951904.1	ammonium transporter	-
I5961_RS27535 (I5961_27370)	glnK	5987618..5987956 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
I5961_RS27540 (I5961_27375)	-	5988355..5988615 (+)	261	WP_011336527.1	accessory factor UbiK family protein	-
I5961_RS27545 (I5961_27380)	-	5989011..5989538 (+)	528	WP_227233886.1	Bro-N domain-containing protein	-
I5961_RS27550 (I5961_27385)	-	5989533..5989802 (-)	270	WP_227233887.1	HigA family addiction module antitoxin	-
I5961_RS27555 (I5961_27390)	comM	5990299..5991792 (+)	1494	WP_227233889.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
I5961_RS27560 (I5961_27395)	-	5991898..5993874 (-)	1977	WP_227233890.1	methyl-accepting chemotaxis protein	-
I5961_RS27565 (I5961_27400)	-	5994059..5994979 (-)	921	WP_085685856.1	LysR substrate-binding domain-containing protein	-
I5961_RS27570 (I5961_27405)	-	5995138..5996532 (+)	1395	WP_227233892.1	NorM family multidrug efflux MATE transporter	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 52868.11 Da
• Isoelectric Point: 8.1560

>NTDB_id=509248 I5961_RS27555 WP_227233889.1 5990299..5991792(+) (comM) [Pseudomonas sp. IAC-BECa141]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLRVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLTE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAARLVAEARERQQKRQGCANAFLDLPGLKKHCKLSTADEAWLETACERLILSLRSAHRLLKVARTLADLEKCAD
ISREHLAEALQYRPATQ

Nucleotide

• Length: 1494 bp

>NTDB_id=509248 I5961_RS27555 WP_227233889.1 5990299..5991792(+) (comM) [Pseudomonas sp. IAC-BECa141]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGATGCTCCCGCTGTCACCGTCGAAGTCCACCTGGCCAA
CGGCTTGCCCTCGCTGACCATGGTCGGCCTGCCCGAAGCGGCGGTGAAAGAGAGCAAGGACCGGGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAGTTCCCGGCGCGGCGGATCACGCTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGGATTCTGTCGGCGAGCGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAATGTCT
GGGTGAGCTGGCGTTATCCGGCGCTGTGCGGGCGGTGCGCGGGGTGTTGCCTGCGGCACTGGCGGCACGCAAGGCCGGGC
GTACGCTGGTGGTGCCACGGGCGAATGCCGAGGAGGCTTGTCTGGCTTCGGGACTGAGGGTGATTGCGGTGGATCATCTG
CTGGAGGCCGTGGCGCATTTCAATGGACATACACCGGTCGAACCCTATGTCTCGGACGGGCTGATCCATGCCGCCAAACC
CTATCCCGACCTGAATGAAGTACAGGGCCAACTGGCCGCCAAGCGGGCGCTGCTGATTGCCGCCGCCGGTGCACACAACC
TGTTGTTCAGCGGGCCACCCGGGACGGGCAAGACGTTGCTGGCCAGTCGATTGCCGGGGTTGCTGCCACCGCTGACCGAG
AGTGAAGCGCTGGAAGTGGCGGCGATTCAATCCGTCGCCAGTGGAGCGCCGCTGACCCATTGGCCACAGCGCCCGTTCCG
CCAGCCGCATCACTCGGCCTCCGGGCCGGCACTGGTCGGTGGCAGTTCAAAACCGCAACCCGGCGAAATCACCCTCGCTC
ATCACGGCGTGCTGTTTCTCGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTTCTGCGTGAACCGCTGGAGTCC
GGCTGCATCGTGATCGCCCGTGCCAAGGAGCGGGTGCGCTTTCCCGCGAGATTCCAGCTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGATATCTGGGCGAACCAAGCGGCAAGTGCTCCTGCACACCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGTTGCTGGACCGGATCGATTTGCACCTGACGGTGGCACGAGAGGCGACAGCGTTGAACCCTGCCGTGAAACCG
GGAGAAGACAGCGCCAGCGCGGCCAGGCTGGTCGCCGAGGCCCGCGAGCGTCAGCAAAAACGTCAGGGCTGCGCCAATGC
GTTTCTCGATTTGCCGGGGCTGAAGAAGCACTGCAAGTTATCCACAGCCGATGAAGCCTGGCTGGAGACGGCGTGCGAAA
GACTGATCTTGTCGTTGCGCTCGGCGCACCGGTTGCTCAAGGTGGCGAGGACATTGGCGGATCTGGAGAAATGCGCGGAT
ATCAGTCGCGAGCATCTGGCCGAAGCGTTGCAATACCGGCCGGCGACTCAGTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (401-493)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	54.949	99.598	0.547
comM	Vibrio campbellii strain DS40M4	54.545	99.598	0.543
comM	Haemophilus influenzae Rd KW20	53.307	100	0.535
comM	Glaesserella parasuis strain SC1401	53	100	0.533
comM	Legionella pneumophila str. Paris	50	100	0.503
comM	Legionella pneumophila strain ERS1305867	50	100	0.503
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.618	100	0.461