Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I3K84_RS12205 Genome accession   NZ_CP065406
Coordinates   2529516..2531054 (+) Length   512 a.a.
NCBI ID   WP_196994606.1    Uniprot ID   -
Organism   Diaphorobacter sp. JS3051     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2524516..2536054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3K84_RS12185 (I3K84_12185) - 2525643..2526593 (-) 951 WP_196994604.1 SMP-30/gluconolactonase/LRE family protein -
  I3K84_RS12190 (I3K84_12190) - 2526733..2528160 (-) 1428 WP_196994605.1 ammonium transporter -
  I3K84_RS12195 (I3K84_12195) glnK 2528207..2528545 (-) 339 WP_011803632.1 P-II family nitrogen regulator -
  I3K84_RS12200 (I3K84_12200) - 2528566..2529297 (-) 732 WP_047350190.1 TorF family putative porin -
  I3K84_RS12205 (I3K84_12205) comM 2529516..2531054 (+) 1539 WP_196994606.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I3K84_RS12210 (I3K84_12210) - 2531100..2532823 (+) 1724 Protein_2431 methyl-accepting chemotaxis protein -
  I3K84_RS12215 (I3K84_12215) - 2532946..2533755 (-) 810 WP_196994607.1 SDR family NAD(P)-dependent oxidoreductase -
  I3K84_RS12220 (I3K84_12220) - 2533864..2534781 (+) 918 WP_196994608.1 LysR family transcriptional regulator -
  I3K84_RS12225 (I3K84_12225) - 2534812..2535591 (-) 780 WP_011803626.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53642.43 Da        Isoelectric Point: 7.5333

>NTDB_id=509215 I3K84_RS12205 WP_196994606.1 2529516..2531054(+) (comM) [Diaphorobacter sp. JS3051]
MSLALVQSRALLGLHAPAVTVEVHLANGLPSFALVGLADVEVKEARERVRSALQNAGLEFPANKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLDGWEFAGELSLSGLLRPVRGALATSLALRALAQPVRTVLPPGSAEEAALVPGTEIYRA
HHLLDVVRQFVPVPPPNDDGADDGGWQRLQPAPPAPATDGPDLADVKGQAAAKRALEIAAAGGHGLLLVGPPGSGKSMLA
QRFAGLLPPMGVEQALESAAIASLAGRFSPAQWMQRTTASPHHSCSAIALVGGGSPPRPGEISLAHEGVLFLDEFPEFAR
SALEALREPLESGRITIARAAQRAEFPARFQLVAAMNPCPCGFAGSHQRACRCTPDQIARYQGKLSGPLLDRIDLHVEVP
ALPPEELLGAPPGEPSGAVRERVARAHERALQRQGKANQALQGQELEQMAALDTAAARFLQAAAARLAWSARSTHRALKV
ARTIADLSGCETVGAAHVAEAVQYRRVLRAPA

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=509215 I3K84_RS12205 WP_196994606.1 2529516..2531054(+) (comM) [Diaphorobacter sp. JS3051]
ATGAGTCTTGCTTTGGTGCAAAGCCGCGCCCTGCTGGGCCTGCACGCGCCCGCCGTTACGGTGGAAGTACACCTGGCCAA
CGGGTTGCCCAGCTTCGCGCTGGTGGGCCTGGCCGATGTCGAGGTCAAGGAGGCGCGCGAGCGCGTGCGCTCCGCGCTGC
AGAACGCCGGGCTGGAATTCCCGGCCAACAAGAAGATCACCGTGAACCTGGCGCCGGCCGATCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCCGCGAGCGGGCAGATCGACGCGGCCCGGTTGGACGGCTGGGAGTT
CGCCGGCGAGCTATCGCTGTCGGGCCTGCTGCGCCCGGTGCGCGGCGCCCTGGCGACCAGCTTGGCGCTGCGCGCGCTGG
CGCAGCCCGTACGCACGGTGCTTCCCCCCGGCAGCGCCGAAGAAGCTGCGCTGGTGCCGGGCACCGAGATCTACCGCGCG
CACCACCTGTTGGACGTGGTACGCCAGTTCGTGCCCGTGCCCCCGCCGAACGATGATGGCGCGGACGACGGCGGTTGGCA
GCGGCTGCAACCCGCGCCGCCGGCCCCGGCCACCGATGGCCCGGACCTGGCCGACGTGAAGGGGCAGGCCGCGGCCAAGC
GCGCACTGGAGATCGCTGCCGCAGGCGGGCACGGGCTGCTGCTCGTGGGGCCCCCGGGCTCGGGCAAGTCCATGCTGGCC
CAGCGTTTTGCCGGGCTGCTGCCCCCGATGGGGGTGGAGCAAGCGCTGGAGAGCGCGGCCATTGCCAGCCTGGCGGGGCG
CTTCAGCCCCGCGCAGTGGATGCAGCGCACCACAGCCAGCCCGCACCACAGCTGCAGCGCGATCGCGCTGGTGGGTGGGG
GCTCGCCGCCGCGCCCGGGCGAGATCTCGCTCGCGCACGAAGGCGTGCTGTTCCTCGATGAATTCCCCGAATTCGCCCGC
AGCGCCCTGGAGGCGCTGCGCGAGCCGCTGGAGAGCGGGCGCATCACCATTGCCCGGGCGGCGCAGCGCGCCGAGTTCCC
GGCGCGCTTTCAGCTCGTGGCGGCCATGAACCCCTGCCCCTGTGGTTTTGCGGGCTCGCACCAGCGCGCCTGCCGCTGCA
CACCCGACCAGATCGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAGGTGCCC
GCGCTGCCGCCCGAGGAACTGCTGGGCGCCCCGCCCGGCGAACCCAGCGGCGCCGTGCGCGAACGCGTGGCCCGCGCGCA
CGAACGAGCGCTCCAGCGCCAGGGCAAGGCCAACCAGGCATTGCAGGGCCAGGAGCTGGAACAGATGGCGGCGCTGGACA
CCGCGGCCGCGCGGTTCCTGCAGGCCGCGGCGGCGCGCCTGGCGTGGTCGGCGCGCAGCACGCACCGGGCCCTCAAGGTT
GCACGTACTATTGCCGATCTATCGGGCTGCGAGACCGTGGGCGCCGCCCATGTGGCCGAAGCCGTGCAATACCGGCGCGT
CCTGCGCGCACCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-406)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-505)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.326

100

0.527
  comM Haemophilus influenzae Rd KW20

50.769

100

0.516
  comM Vibrio campbellii strain DS40M4

50.485

100

0.508
  comM Glaesserella parasuis strain SC1401

50.098

99.414

0.498
  comM Legionella pneumophila str. Paris

48.544

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.544

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.023

100

0.434