Detailed information NTG0509116

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: ST1A_RS08920
• Genome accession: NZ_CP065384
• Coordinates: 1724876..1725976 (-)
• Length: 366 a.a.
• NCBI ID: WP_120764773.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 1A
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1719876..1730976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST1A_RS08875	-	1720201..1720476 (-)	276	WP_011681681.1	hypothetical protein	-
ST1A_RS08880 (ST1A_08810)	-	1720488..1720685 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
ST1A_RS08885 (ST1A_08815)	-	1720934..1722127 (-)	1194	WP_014608740.1	acetate kinase	-
ST1A_RS08890 (ST1A_08820)	comYH	1722183..1723139 (-)	957	WP_011681684.1	class I SAM-dependent methyltransferase	Machinery gene
ST1A_RS08895 (ST1A_08825)	comGG	1723184..1723501 (-)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
ST1A_RS08900 (ST1A_08830)	comYF	1723479..1723916 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
ST1A_RS08905 (ST1A_08835)	comGE	1723900..1724193 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
ST1A_RS08910 (ST1A_08840)	comYD	1724165..1724593 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
ST1A_RS08915 (ST1A_08845)	comYC	1724553..1724879 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
ST1A_RS08920 (ST1A_08850)	comYB	1724876..1725976 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
ST1A_RS08925 (ST1A_08855)	comYA	1725858..1726799 (-)	942	WP_014622005.1	competence type IV pilus ATPase ComGA	Machinery gene
ST1A_RS08930 (ST1A_08860)	-	1726880..1727242 (-)	363	WP_023909982.1	DUF1033 family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 41876.03 Da
• Isoelectric Point: 10.1377

>NTDB_id=509116 ST1A_RS08920 WP_120764773.1 1724876..1725976(-) (comYB) [Streptococcus thermophilus strain 1A]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide

• Length: 1101 bp

>NTDB_id=509116 ST1A_RS08920 WP_120764773.1 1724876..1725976(-) (comYB) [Streptococcus thermophilus strain 1A]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTCATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (236-356)

• Type II secretion system (T2SS), protein F (T2SSF) (51-164)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.678	93.443	0.511
comYB	Streptococcus mutans UA159	54.678	93.443	0.511
comYB	Streptococcus gordonii str. Challis substr. CH1	51.17	93.443	0.478
comGB/cglB	Streptococcus mitis NCTC 12261	50.453	90.437	0.456
comGB/cglB	Streptococcus mitis SK321	49.697	90.164	0.448
comGB/cglB	Streptococcus pneumoniae Rx1	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae D39	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae R6	49.695	89.617	0.445
comGB/cglB	Streptococcus pneumoniae TIGR4	49.695	89.617	0.445
comGB	Lactococcus lactis subsp. cremoris KW2	45.758	90.164	0.413