Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   I5Q61_RS03855 Genome accession   NZ_CP065357
Coordinates   767609..769168 (-) Length   519 a.a.
NCBI ID   WP_196913854.1    Uniprot ID   -
Organism   Campylobacter hepaticus strain UF2019SK1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 762609..774168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Q61_RS03825 (I5Q61_03825) - 762821..763501 (+) 681 WP_066776453.1 hypothetical protein -
  I5Q61_RS03830 (I5Q61_03830) - 764431..764691 (-) 261 WP_196913851.1 hypothetical protein -
  I5Q61_RS03835 (I5Q61_03835) - 764753..765022 (+) 270 WP_196913852.1 hypothetical protein -
  I5Q61_RS03840 (I5Q61_03840) - 765022..765198 (+) 177 WP_196913853.1 hypothetical protein -
  I5Q61_RS03845 (I5Q61_03845) - 765305..766399 (+) 1095 WP_243273560.1 autotransporter outer membrane beta-barrel domain-containing protein -
  I5Q61_RS03850 (I5Q61_03850) ctsF 766434..767612 (-) 1179 WP_131952302.1 type II secretion system F family protein Machinery gene
  I5Q61_RS03855 (I5Q61_03855) ctsE 767609..769168 (-) 1560 WP_196913854.1 GspE/PulE family protein Machinery gene
  I5Q61_RS03860 (I5Q61_03860) ctsX 769158..769733 (-) 576 WP_066779512.1 transformation system protein Machinery gene
  I5Q61_RS03865 (I5Q61_03865) ctsP 769737..770345 (-) 609 WP_066779509.1 ATP-binding protein Machinery gene
  I5Q61_RS03870 (I5Q61_03870) ctsD 770338..771756 (-) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  I5Q61_RS03875 (I5Q61_03875) ctsR 771734..772009 (-) 276 WP_240621320.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 59823.50 Da        Isoelectric Point: 6.0901

>NTDB_id=508825 I5Q61_RS03855 WP_196913854.1 767609..769168(-) (ctsE) [Campylobacter hepaticus strain UF2019SK1]
MQDNMEAIFQAYINDNMSLDQICKQCSCSVDEFFQKLAHFYKIDFIDLDQYDHFIYENMPFSLFEKFRFLLIENANGFLI
VRSKPCSLELLEQVKNFVFCENMSMVIANELKITKILNQIRIQEKMSKLSTKLRLEWQEKEKKDDQSCISQIFDFLLNEI
LPFNASDMHIEARADDALIRFRVDGILHQLLECQKDVYEALVFYIKFLACLNLAESRKAQDGSFTLDFKNEKYDFRVSCL
PLIYGESIVIRILKHNKAILELNKLNLGDKNLQIVKNTLKRSHGMILLTGPTGSSKSTTLYACLNALKSIEKKIISAEDP
IEYKMPLVQQILLNSKAGVEFNNILRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDAFSTIDRLLDMK
AKAYLIASALSLIIAQRLVRKLCPWCKQESQKSYAEFQGDFFEAKGCEYCHYSGFYGRELIAECLSIDEELSCAIRENKD
KKTLIELAKKQGFTSMFEQGLQKAKEGITSIDELFRLVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=508825 I5Q61_RS03855 WP_196913854.1 767609..769168(-) (ctsE) [Campylobacter hepaticus strain UF2019SK1]
ATGCAAGATAATATGGAAGCAATTTTTCAAGCTTATATTAATGATAACATGAGTCTTGATCAAATTTGTAAGCAATGCTC
TTGTAGTGTGGATGAATTTTTTCAAAAATTAGCCCATTTTTATAAGATTGATTTTATAGATTTAGATCAGTATGATCATT
TTATTTATGAGAATATGCCCTTTTCTTTATTTGAAAAATTTAGATTTTTACTGATTGAAAATGCGAATGGGTTTTTAATC
GTTAGGTCTAAACCTTGTTCTTTAGAACTCTTAGAACAAGTTAAAAATTTTGTATTTTGTGAAAATATGAGTATGGTTAT
TGCCAATGAGTTAAAAATTACTAAAATTTTAAATCAAATTCGTATACAAGAAAAAATGAGTAAATTAAGCACTAAACTCA
GGCTTGAGTGGCAAGAAAAAGAAAAAAAAGATGATCAAAGTTGCATTAGTCAAATTTTTGATTTTTTACTCAATGAAATT
TTACCTTTTAATGCTAGCGATATGCATATAGAAGCAAGAGCTGATGATGCTTTAATTAGATTTAGGGTTGATGGTATTTT
GCATCAATTGCTTGAGTGTCAAAAAGATGTTTATGAGGCTTTAGTTTTTTATATCAAATTTTTAGCTTGTTTAAATTTAG
CCGAATCAAGAAAGGCACAAGATGGGAGTTTTACATTAGATTTTAAAAATGAAAAATATGATTTTCGTGTTTCATGCTTG
CCTTTGATTTATGGAGAGAGTATTGTAATAAGAATTTTAAAACACAATAAAGCAATTTTAGAATTAAACAAATTGAATTT
GGGAGATAAGAATTTACAAATTGTCAAAAATACCCTAAAACGTTCCCATGGAATGATTTTATTAACAGGTCCTACAGGAA
GTAGTAAAAGTACAACCTTATATGCTTGTTTAAATGCATTAAAAAGTATAGAGAAAAAAATTATTTCCGCAGAAGATCCT
ATAGAGTATAAAATGCCTTTAGTCCAACAAATTTTGCTTAATTCTAAAGCCGGGGTTGAATTTAATAATATCTTAAGAGC
AATTTTAAGACAGGATCCAGATATCATTATGATAGGGGAAATTCGTGACGAAGAAAGTCTTGATATAGCTTTAAAAGCAT
CTTTAACAGGACATTTACTTTTAAGTACCTTGCATACTAATGATGCTTTTTCTACTATTGATAGGCTTTTGGATATGAAG
GCAAAAGCTTATTTAATAGCTTCAGCCTTAAGTCTTATCATAGCCCAACGTTTAGTTAGAAAACTTTGTCCTTGGTGCAA
GCAAGAAAGTCAAAAATCTTATGCAGAATTTCAAGGAGATTTTTTTGAGGCTAAAGGATGTGAGTATTGTCATTATAGTG
GATTTTATGGGAGAGAATTGATTGCTGAGTGTTTAAGCATTGATGAAGAACTATCTTGTGCTATAAGGGAAAATAAGGAT
AAAAAAACCCTAATCGAACTTGCTAAAAAACAAGGTTTTACAAGTATGTTTGAACAAGGTTTGCAAAAAGCTAAAGAAGG
TATTACTAGTATAGATGAACTTTTTAGGCTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(158-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

75.915

100

0.759
  pilB Vibrio cholerae strain A1552

36.031

100

0.36