Detailed information NTG0508828

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: I5Q61_RS03870
• Genome accession: NZ_CP065357
• Coordinates: 770338..771756 (-)
• Length: 472 a.a.
• NCBI ID: WP_066779506.1
• Uniprot ID: A0A6A7JSY7
• Organism: Campylobacter hepaticus strain UF2019SK1
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 765338..776756

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I5Q61_RS03850 (I5Q61_03850)	ctsF	766434..767612 (-)	1179	WP_131952302.1	type II secretion system F family protein	Machinery gene
I5Q61_RS03855 (I5Q61_03855)	ctsE	767609..769168 (-)	1560	WP_196913854.1	GspE/PulE family protein	Machinery gene
I5Q61_RS03860 (I5Q61_03860)	ctsX	769158..769733 (-)	576	WP_066779512.1	transformation system protein	Machinery gene
I5Q61_RS03865 (I5Q61_03865)	ctsP	769737..770345 (-)	609	WP_066779509.1	ATP-binding protein	Machinery gene
I5Q61_RS03870 (I5Q61_03870)	ctsD	770338..771756 (-)	1419	WP_066779506.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
I5Q61_RS03875 (I5Q61_03875)	ctsR	771734..772009 (-)	276	WP_240621320.1	transformation system protein	Machinery gene
I5Q61_RS03880 (I5Q61_03880)	nifJ	772051..775611 (-)	3561	WP_066779501.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
I5Q61_RS03885 (I5Q61_03885)	-	775696..776340 (-)	645	WP_066779498.1	HAD family hydrolase	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53597.08 Da
• Isoelectric Point: 7.1833

>NTDB_id=508828 I5Q61_RS03870 WP_066779506.1 770338..771756(-) (ctsD) [Campylobacter hepaticus strain UF2019SK1]
MVRLVLISCLFCCHHLFAIDCQKRLFDISINEKVSIQESLDELARYCSFSIIVKDKIAKAKLENLQNSVNIHQMSLDEIF
NFFIKEHDLDYDFDGKILRIVGIDTKIFKISYITSVREGQSITKASVDSKPRQSEYGGGFNDMEDNMIKSMEKFDFWQNI
EKEITTLLKNSHENYEFKPPIINSNAGLIIVTGTNSQLQSVKNYLQKLENRLKKQVIIDVSILAVNLNQSHSSGINWQNF
NIDFHSQTSKNENSFIQIQNGQGFVKNLGLRANLNFDSVINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKES
SKGNENGVIISESYNNYSVFIGILLNILPEISDDGKITLRINPSLSDFKYPQDNKRQKEPRNIAPDTVQKKLSSVVRMEN
NQTLILGGLISHDKTNDNNAVNILSKLPIFGPLFRSENVRSNTTEIVFIITPSIVDYAHLPSLKDLGFKYYE

Nucleotide

• Length: 1419 bp

>NTDB_id=508828 I5Q61_RS03870 WP_066779506.1 770338..771756(-) (ctsD) [Campylobacter hepaticus strain UF2019SK1]
ATGGTAAGATTAGTATTAATTAGTTGTTTGTTTTGTTGTCATCATCTTTTTGCAATAGATTGTCAAAAACGCCTTTTTGA
TATTAGCATTAATGAGAAAGTAAGCATACAAGAAAGTCTTGATGAATTAGCAAGATATTGTTCTTTTAGCATTATTGTTA
AGGATAAAATTGCTAAAGCAAAACTAGAAAATCTCCAAAATTCTGTTAATATCCATCAAATGAGTCTTGATGAAATTTTT
AATTTTTTCATTAAGGAACATGATCTTGATTATGATTTTGATGGAAAAATTTTAAGAATTGTAGGTATAGATACAAAGAT
TTTTAAAATAAGTTATATTACTTCTGTTAGAGAGGGTCAAAGCATTACTAAAGCTTCTGTAGATTCAAAACCAAGACAAA
GTGAATATGGGGGAGGTTTTAATGATATGGAAGATAATATGATTAAAAGTATGGAGAAATTTGATTTTTGGCAAAATATA
GAAAAAGAGATTACTACATTATTGAAAAATTCTCATGAAAATTATGAGTTTAAACCCCCAATCATCAATTCTAATGCAGG
TCTTATTATCGTTACGGGGACAAATTCACAACTTCAAAGTGTTAAAAATTATTTACAAAAATTAGAAAATCGTCTTAAAA
AACAAGTTATTATTGATGTGAGTATACTTGCTGTTAATCTTAATCAAAGTCATTCTAGCGGGATTAATTGGCAAAATTTT
AATATAGATTTTCATTCTCAAACAAGTAAGAATGAAAATTCTTTTATACAAATTCAAAATGGTCAGGGTTTTGTTAAAAA
TTTAGGTTTAAGGGCAAATTTAAATTTTGATTCTGTTATTAATTTTCTTTCTCAAAATGGTAAAACCAGTGTGCTTTCTA
ATCCAAAACTTATGGCTTTAAACAATCAACAAGCAATTATTTCTGTAGGAGATACCATAAATTATCAAGTTAAAGAAAGT
TCTAAAGGGAATGAAAATGGTGTAATTATTAGTGAAAGTTATAATAATTATTCAGTTTTTATAGGTATTTTGCTTAATAT
CTTGCCTGAGATTTCTGATGATGGTAAGATTACATTAAGAATTAATCCAAGTTTGAGTGATTTTAAATACCCACAGGATA
ATAAAAGACAAAAAGAACCCCGTAACATTGCCCCTGATACTGTGCAAAAAAAGCTTTCTAGTGTAGTGCGTATGGAAAAT
AATCAAACTTTGATTTTAGGTGGACTTATTTCTCATGATAAAACTAATGATAATAATGCTGTAAATATTTTATCAAAACT
TCCTATTTTTGGACCCCTTTTTAGGAGTGAGAATGTGCGTTCTAATACCACTGAGATTGTTTTTATCATCACTCCGAGTA
TAGTTGATTATGCTCATTTACCCAGTCTTAAAGATTTAGGATTTAAATATTATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

3D structure

• AlphaFold DB: A0A6A7JSY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	84.746	100	0.847