Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   I5Q61_RS03875 Genome accession   NZ_CP065357
Coordinates   771734..772009 (-) Length   91 a.a.
NCBI ID   WP_240621320.1    Uniprot ID   -
Organism   Campylobacter hepaticus strain UF2019SK1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 766734..777009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Q61_RS03855 (I5Q61_03855) ctsE 767609..769168 (-) 1560 WP_196913854.1 GspE/PulE family protein Machinery gene
  I5Q61_RS03860 (I5Q61_03860) ctsX 769158..769733 (-) 576 WP_066779512.1 transformation system protein Machinery gene
  I5Q61_RS03865 (I5Q61_03865) ctsP 769737..770345 (-) 609 WP_066779509.1 ATP-binding protein Machinery gene
  I5Q61_RS03870 (I5Q61_03870) ctsD 770338..771756 (-) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  I5Q61_RS03875 (I5Q61_03875) ctsR 771734..772009 (-) 276 WP_240621320.1 transformation system protein Machinery gene
  I5Q61_RS03880 (I5Q61_03880) nifJ 772051..775611 (-) 3561 WP_066779501.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  I5Q61_RS03885 (I5Q61_03885) - 775696..776340 (-) 645 WP_066779498.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10715.36 Da        Isoelectric Point: 6.3429

>NTDB_id=508829 I5Q61_RS03875 WP_240621320.1 771734..772009(-) (ctsR) [Campylobacter hepaticus strain UF2019SK1]
MAQNDFEDKKKYTDFLKLQNPFINPTFEKLQAIKISAIMFDRVKIDDKWYKKGDSIDEAIISKIDTQEIKIQYDNLEFVI
PINKNGKISIN

Nucleotide


Download         Length: 276 bp        

>NTDB_id=508829 I5Q61_RS03875 WP_240621320.1 771734..772009(-) (ctsR) [Campylobacter hepaticus strain UF2019SK1]
ATAGCACAAAATGATTTTGAAGATAAGAAAAAATATACAGATTTTCTTAAGCTTCAAAATCCCTTCATAAACCCCACTTT
TGAAAAATTACAAGCAATTAAAATTAGTGCTATCATGTTTGATAGAGTAAAAATAGATGATAAATGGTATAAAAAAGGTG
ATAGTATTGATGAAGCTATCATTAGCAAGATAGATACTCAAGAAATTAAAATACAATATGATAATTTAGAATTTGTTATT
CCAATAAATAAAAATGGTAAGATTAGTATTAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

62.887

100

0.67