Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   I5Q61_RS03865 Genome accession   NZ_CP065357
Coordinates   769737..770345 (-) Length   202 a.a.
NCBI ID   WP_066779509.1    Uniprot ID   A0A424Z0T2
Organism   Campylobacter hepaticus strain UF2019SK1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764737..775345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Q61_RS03835 (I5Q61_03835) - 764753..765022 (+) 270 WP_196913852.1 hypothetical protein -
  I5Q61_RS03840 (I5Q61_03840) - 765022..765198 (+) 177 WP_196913853.1 hypothetical protein -
  I5Q61_RS03845 (I5Q61_03845) - 765305..766399 (+) 1095 WP_243273560.1 autotransporter outer membrane beta-barrel domain-containing protein -
  I5Q61_RS03850 (I5Q61_03850) ctsF 766434..767612 (-) 1179 WP_131952302.1 type II secretion system F family protein Machinery gene
  I5Q61_RS03855 (I5Q61_03855) ctsE 767609..769168 (-) 1560 WP_196913854.1 GspE/PulE family protein Machinery gene
  I5Q61_RS03860 (I5Q61_03860) ctsX 769158..769733 (-) 576 WP_066779512.1 transformation system protein Machinery gene
  I5Q61_RS03865 (I5Q61_03865) ctsP 769737..770345 (-) 609 WP_066779509.1 ATP-binding protein Machinery gene
  I5Q61_RS03870 (I5Q61_03870) ctsD 770338..771756 (-) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  I5Q61_RS03875 (I5Q61_03875) ctsR 771734..772009 (-) 276 WP_240621320.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23952.37 Da        Isoelectric Point: 10.1253

>NTDB_id=508827 I5Q61_RS03865 WP_066779509.1 769737..770345(-) (ctsP) [Campylobacter hepaticus strain UF2019SK1]
MNKIIPFREAIFHQMDKILSNNRALIFLWGKSGCGKSVLLQRLAKKYQIDFIHEMFKDEIFLKEKIEFLKHKGQKLIILD
EVGKYNHDMLENIRIYSDTMSFVLASHKYLNLFKKEYFKSRLSASFELKKPDLKELDDYIKLKFGLSFSTSCLKILKKIA
KGNLRYLDKTLKTFCEINIYFDKNKTQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=508827 I5Q61_RS03865 WP_066779509.1 769737..770345(-) (ctsP) [Campylobacter hepaticus strain UF2019SK1]
ATGAATAAGATCATTCCTTTTAGAGAAGCAATTTTTCATCAAATGGATAAGATTTTATCAAATAATAGGGCTTTGATTTT
TTTATGGGGAAAAAGTGGGTGTGGAAAAAGTGTATTGTTGCAAAGATTAGCAAAAAAATATCAAATTGATTTTATTCATG
AAATGTTTAAAGATGAGATTTTTTTAAAAGAAAAAATAGAGTTTTTAAAGCATAAAGGACAAAAATTAATTATTTTAGAT
GAAGTAGGAAAATATAACCACGATATGTTAGAAAATATTAGAATTTATAGTGATACTATGAGTTTTGTTTTAGCTTCACA
TAAGTATTTAAATCTTTTTAAAAAAGAATATTTTAAAAGTCGTTTAAGCGCATCTTTTGAACTTAAAAAACCTGATCTTA
AAGAACTTGATGATTATATTAAATTAAAATTTGGGCTTAGTTTTTCAACATCATGTCTTAAAATTTTAAAAAAAATTGCT
AAGGGGAATTTAAGATATTTAGATAAGACTTTAAAGACTTTTTGTGAGATTAATATTTATTTTGATAAAAATAAAACTCA
AGAATATATTTTAAAACTTAGTGCTTTAGAAAACGGTTTATTAAGGTAG

Domains

Predicted by InterproScan.

RNA helicase (RNA_helicase)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A424Z0T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

73.762

100

0.738