Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   I5Q61_RS03850 Genome accession   NZ_CP065357
Coordinates   766434..767612 (-) Length   392 a.a.
NCBI ID   WP_131952302.1    Uniprot ID   -
Organism   Campylobacter hepaticus strain UF2019SK1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 761434..772612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5Q61_RS03815 (I5Q61_03815) - 761753..762547 (+) 795 WP_066776459.1 hypothetical protein -
  I5Q61_RS03820 (I5Q61_03820) - 762603..762800 (+) 198 WP_196913850.1 hypothetical protein -
  I5Q61_RS03825 (I5Q61_03825) - 762821..763501 (+) 681 WP_066776453.1 hypothetical protein -
  I5Q61_RS03830 (I5Q61_03830) - 764431..764691 (-) 261 WP_196913851.1 hypothetical protein -
  I5Q61_RS03835 (I5Q61_03835) - 764753..765022 (+) 270 WP_196913852.1 hypothetical protein -
  I5Q61_RS03840 (I5Q61_03840) - 765022..765198 (+) 177 WP_196913853.1 hypothetical protein -
  I5Q61_RS03845 (I5Q61_03845) - 765305..766399 (+) 1095 WP_243273560.1 autotransporter outer membrane beta-barrel domain-containing protein -
  I5Q61_RS03850 (I5Q61_03850) ctsF 766434..767612 (-) 1179 WP_131952302.1 type II secretion system F family protein Machinery gene
  I5Q61_RS03855 (I5Q61_03855) ctsE 767609..769168 (-) 1560 WP_196913854.1 GspE/PulE family protein Machinery gene
  I5Q61_RS03860 (I5Q61_03860) ctsX 769158..769733 (-) 576 WP_066779512.1 transformation system protein Machinery gene
  I5Q61_RS03865 (I5Q61_03865) ctsP 769737..770345 (-) 609 WP_066779509.1 ATP-binding protein Machinery gene
  I5Q61_RS03870 (I5Q61_03870) ctsD 770338..771756 (-) 1419 WP_066779506.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  I5Q61_RS03875 (I5Q61_03875) ctsR 771734..772009 (-) 276 WP_240621320.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45993.93 Da        Isoelectric Point: 9.8320

>NTDB_id=508824 I5Q61_RS03850 WP_131952302.1 766434..767612(-) (ctsF) [Campylobacter hepaticus strain UF2019SK1]
MKFYEIEFLKNNHSYKQIIRAKNLNSAQAKALSRNWKIIHIQEFQKFHFVRLKDENFIFFFKELALLCEAGLSVQEGIKQ
IYLARSCKIIKRVLDNLILAQNLNQAFKNAYFGLNSAELALIHMAENTGKISEVFRQIASLRQKSMENKKQIKKALRYPI
LVFLSTIGAFLFLMLFVMPNFKDWFESLDVELPLITHIMLQSYNFLKIYGVVFLAFFIFLFFTILLCYKYFDSFALYCDF
LFLKLPLFSRLILYNQNHYFFIVFSLLLKSGISISKAFYLASSGLGNRFLMLKYQKILVLLDGGFELSQAFKQMYIVDSL
VFSMLNIAMKSAKLELLSEEIAKYYEQKSQNIMEQFLVLLEPVMTLFVAFLVLFLALGIFLPMWELSAKMHF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=508824 I5Q61_RS03850 WP_131952302.1 766434..767612(-) (ctsF) [Campylobacter hepaticus strain UF2019SK1]
ATGAAATTTTATGAGATAGAATTTCTTAAAAATAATCACTCCTATAAACAAATCATAAGGGCTAAAAATTTAAATAGTGC
TCAAGCAAAAGCCTTGTCTAGGAATTGGAAAATCATACATATTCAAGAATTTCAAAAGTTTCATTTTGTAAGATTAAAAG
ATGAAAATTTTATATTCTTTTTTAAGGAATTGGCTTTATTGTGTGAAGCTGGTTTAAGTGTTCAAGAGGGTATTAAACAA
ATATATCTTGCGCGTTCTTGTAAAATTATAAAAAGGGTATTAGATAATTTAATTTTAGCACAAAATTTAAATCAAGCTTT
TAAAAATGCTTATTTTGGACTAAACTCAGCAGAATTAGCTTTAATCCATATGGCTGAAAATACAGGAAAAATAAGTGAAG
TTTTTAGACAAATTGCTAGTCTTAGGCAAAAAAGTATGGAGAATAAAAAACAAATTAAAAAAGCTTTAAGATATCCTATT
TTAGTTTTTTTAAGTACCATTGGGGCATTTTTGTTTTTAATGCTTTTTGTGATGCCAAATTTTAAAGATTGGTTTGAAAG
TTTGGATGTGGAATTGCCACTTATTACGCATATCATGCTACAAAGTTATAATTTTTTAAAAATTTATGGAGTAGTGTTTC
TTGCATTTTTTATTTTTTTATTTTTTACAATACTATTGTGTTATAAATATTTTGATTCTTTTGCATTGTATTGCGATTTT
TTATTTTTAAAACTACCTTTATTTTCTCGTTTGATTTTATATAATCAAAACCATTATTTTTTTATCGTTTTTTCTCTACT
TTTAAAGAGTGGAATTTCCATTTCCAAAGCTTTTTATCTAGCTAGTTCAGGGCTTGGAAATAGGTTTTTGATGTTAAAAT
ATCAAAAAATTTTAGTTTTATTAGATGGTGGTTTTGAATTAAGTCAAGCTTTTAAACAAATGTATATTGTGGATTCTTTG
GTCTTTTCTATGCTTAATATTGCCATGAAAAGTGCTAAATTAGAGCTTTTAAGCGAAGAAATTGCTAAGTATTATGAGCA
AAAAAGTCAAAATATCATGGAGCAATTTTTAGTTTTATTAGAACCTGTAATGACTTTATTTGTAGCTTTTTTGGTTTTAT
TTTTAGCTTTGGGCATATTTTTGCCTATGTGGGAGCTTAGTGCTAAAATGCATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

70.153

100

0.702