Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SAIN_RS02170 Genome accession   NC_022244
Coordinates   435862..436527 (+) Length   221 a.a.
NCBI ID   WP_003025757.1    Uniprot ID   -
Organism   Streptococcus anginosus C1051     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430862..441527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS02150 - 432039..432560 (+) 522 WP_037590270.1 hypothetical protein -
  SAIN_RS02155 (SAIN_0421) cysK 432844..433773 (-) 930 WP_021001371.1 cysteine synthase A -
  SAIN_RS02160 (SAIN_0422) - 433872..434507 (-) 636 WP_021001372.1 YigZ family protein -
  SAIN_RS02165 (SAIN_0423) comFA/cflA 434564..435865 (+) 1302 WP_021001373.1 DEAD/DEAH box helicase Machinery gene
  SAIN_RS02170 (SAIN_0424) comFC/cflB 435862..436527 (+) 666 WP_003025757.1 ComF family protein Machinery gene
  SAIN_RS02175 (SAIN_0425) hpf 436606..437148 (+) 543 WP_003025754.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SAIN_RS02180 (SAIN_0426) rsmD 437336..437884 (+) 549 WP_025271932.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SAIN_RS02185 (SAIN_0427) coaD 437874..438371 (+) 498 WP_021001374.1 pantetheine-phosphate adenylyltransferase -
  SAIN_RS02190 (SAIN_0428) sepM 438352..439407 (+) 1056 WP_021001375.1 SepM family pheromone-processing serine protease Regulator
  SAIN_RS02195 (SAIN_0429) - 439545..440111 (+) 567 WP_021001376.1 YutD family protein -
  SAIN_RS02200 (SAIN_0430) rlmN 440145..441227 (+) 1083 WP_021001377.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25416.44 Da        Isoelectric Point: 7.0385

>NTDB_id=50875 SAIN_RS02170 WP_003025757.1 435862..436527(+) (comFC/cflB) [Streptococcus anginosus C1051]
MNNCLLCESLLDEKLTFCDLLTLKKPKARTCDDCFEKFQLISAQHCPKCYREGTCEVCMDCQVWIEKGKEVCHKSCFVYN
EAMKDFFSQYKFQGDYTLYSVFTEVLQKELKGYSDYTLVPIPVSAKKYQTRGFNQVTALLEGTKLPFKEVLEKHDTIAQS
SKTREERLQSQQCFKVKDNVQVPTKVLLIDDIYTTGSTLQLAKEILVEAGVKEIVTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=50875 SAIN_RS02170 WP_003025757.1 435862..436527(+) (comFC/cflB) [Streptococcus anginosus C1051]
ATGAATAACTGTCTGTTATGTGAAAGTCTACTTGATGAAAAGCTAACATTTTGTGATTTGCTGACTTTGAAGAAGCCAAA
AGCAAGGACTTGTGATGACTGTTTTGAAAAATTTCAGCTCATTTCAGCGCAGCATTGCCCGAAGTGCTATCGTGAAGGGA
CATGCGAAGTCTGCATGGATTGTCAAGTATGGATAGAAAAAGGAAAAGAAGTTTGTCATAAAAGTTGTTTTGTATATAAC
GAAGCCATGAAAGACTTTTTCAGCCAATATAAATTTCAAGGAGATTATACTCTTTATTCTGTATTTACAGAAGTTTTGCA
AAAGGAATTAAAAGGATACAGCGATTATACGCTTGTTCCCATTCCTGTAAGTGCCAAAAAGTATCAGACAAGAGGGTTTA
ATCAAGTGACAGCTCTTCTTGAGGGTACAAAGTTGCCATTTAAGGAAGTTTTAGAAAAGCATGATACAATTGCTCAATCA
AGCAAGACGAGAGAGGAGCGCTTGCAAAGCCAGCAGTGCTTTAAAGTGAAAGACAATGTTCAAGTTCCGACAAAAGTTCT
TTTGATAGATGACATTTATACAACAGGCTCAACCCTACAATTAGCCAAGGAAATTTTAGTGGAAGCAGGAGTGAAAGAAA
TTGTGACATTTTCATTGGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

47.706

98.643

0.471
  comFC/cflB Streptococcus pneumoniae TIGR4

46.789

98.643

0.462
  comFC/cflB Streptococcus mitis NCTC 12261

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae Rx1

46.33

98.643

0.457
  comFC/cflB Streptococcus pneumoniae D39

46.33

98.643

0.457
  comFC/cflB Streptococcus pneumoniae R6

46.33

98.643

0.457
  comFC Bacillus subtilis subsp. subtilis str. 168

35.242

100

0.362

Multiple sequence alignment