Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IT970_RS00875 Genome accession   NZ_CP065231
Coordinates   181945..183456 (+) Length   503 a.a.
NCBI ID   WP_180311289.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. A41-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 176945..188456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT970_RS00860 (IT970_00860) - 177297..180794 (+) 3498 WP_196857532.1 hypothetical protein -
  IT970_RS00865 (IT970_00865) - 180850..181221 (+) 372 WP_196857533.1 hypothetical protein -
  IT970_RS00870 (IT970_00870) - 181292..181906 (+) 615 WP_036974258.1 trimeric intracellular cation channel family protein -
  IT970_RS00875 (IT970_00875) comM 181945..183456 (+) 1512 WP_180311289.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IT970_RS00880 (IT970_00880) - 183553..184257 (-) 705 WP_036974296.1 response regulator transcription factor -
  IT970_RS00885 (IT970_00885) - 184423..186918 (-) 2496 WP_196857534.1 S9 family peptidase -
  IT970_RS00890 (IT970_00890) - 187064..188128 (+) 1065 WP_036974240.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55442.33 Da        Isoelectric Point: 7.2612

>NTDB_id=508262 IT970_RS00875 WP_180311289.1 181945..183456(+) (comM) [Pseudoalteromonas sp. A41-2]
MSLARIFSRAQVGVQAPEVIVEVHLGNGLPAFHIVGLPEASVKEAKDRVRSALENSQFGFPDQRITVNLAPADLPKDGGR
FDLAIAVGILVASGQIVCPDIHRYEFYGELALNGEVRGVNAILPSVLGAKEKGRCCFLPAENDTLASLVSGVSRKAIYSI
QDVWNDLLNQQPLPLNIEYPEQQIERDSIYDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMPSIMPTMS
DDEAISTAALYSIIGQSVDLSKWRERPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGVVTISRAARQMEFPSQFQLIAALNPSPTGSHTDKRATPDQVLRYLSRVSGPFIDRIDLQIELPRLTSAQLQSTEPEE
SSQQVRKRVERAHALQHARQGKVNARLNNKEMNRYCELAAAELQFLARASEKLALSPRSYHRVIKVARTISDLKEQPTIT
LSELKEALNYRAFERLISQLTQF

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=508262 IT970_RS00875 WP_180311289.1 181945..183456(+) (comM) [Pseudoalteromonas sp. A41-2]
GTGTCATTAGCTCGGATTTTCTCTCGTGCTCAAGTAGGAGTGCAAGCTCCAGAAGTCATTGTCGAAGTGCATTTAGGGAA
TGGCTTACCTGCTTTTCATATTGTTGGTTTACCTGAAGCCTCTGTAAAAGAGGCTAAAGATAGAGTGCGCAGTGCGCTTG
AAAACTCACAATTTGGTTTTCCCGATCAGCGCATCACTGTTAACCTTGCGCCCGCTGACCTACCCAAAGACGGAGGGCGC
TTTGACTTAGCCATTGCCGTTGGGATTTTAGTGGCATCAGGGCAAATAGTGTGCCCTGATATTCATCGCTATGAGTTTTA
TGGTGAGCTGGCCTTAAATGGTGAAGTAAGGGGAGTGAATGCTATTTTACCCTCCGTATTAGGAGCGAAAGAAAAGGGTC
GGTGCTGTTTTTTACCAGCGGAAAACGACACCTTAGCCAGTCTTGTTTCTGGTGTGTCACGTAAAGCGATTTATTCTATT
CAAGATGTATGGAACGACTTACTGAATCAGCAGCCCTTACCGCTTAATATTGAGTACCCAGAGCAACAAATAGAACGCGA
TTCAATCTATGATTTAAGTGATGTTAAAGGCCAACCTGGTGCCAAACGTGTGTTGGAAATCGCGGCTGCTGGTGGCCATA
ACTTGCTTTTTTTAGGCCCGCCAGGCACGGGTAAATCGATGCTAGCACAGCGAATGCCAAGCATTATGCCGACCATGTCG
GATGATGAAGCAATTAGCACCGCGGCGCTTTATTCTATTATTGGTCAGTCTGTTGATTTATCTAAGTGGCGAGAGCGTCC
CTTTCGAAATCCACATCATACTTGTTCGGCAGTCGCGCTGGTTGGAGGGTCATCGAACCCGAAGCCCGGTGAAATTTCAC
TGGCACACAACGGCGTGTTATTTTTGGATGAGCTCCCTGAGTTTGAGCGTAAAGTGCTAGACTCGCTTCGTGAGCCAATG
GAAACTGGGGTCGTAACAATATCAAGGGCTGCGAGGCAAATGGAGTTTCCTTCTCAATTTCAGCTTATAGCTGCACTTAA
CCCCAGCCCAACGGGAAGCCATACCGACAAGCGTGCGACACCAGATCAAGTATTGCGCTATTTATCTCGTGTATCGGGTC
CGTTTATTGACCGAATAGATTTACAAATTGAATTACCACGACTTACCAGCGCTCAATTGCAAAGTACCGAACCAGAAGAG
AGCAGTCAGCAAGTACGTAAACGTGTGGAGCGAGCGCATGCGCTTCAGCATGCACGGCAAGGTAAAGTGAATGCACGATT
GAACAATAAAGAAATGAATCGATATTGTGAGCTTGCAGCTGCAGAGTTGCAGTTTCTAGCGAGAGCCAGTGAAAAACTGG
CGCTGTCACCACGTTCTTATCATCGTGTTATTAAAGTTGCCCGAACAATTAGTGACTTAAAAGAGCAACCAACGATCACC
TTAAGCGAATTAAAAGAGGCATTAAATTATCGTGCCTTTGAGCGCCTAATAAGCCAATTAACACAATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.159

100

0.553
  comM Glaesserella parasuis strain SC1401

53.557

100

0.539
  comM Haemophilus influenzae Rd KW20

53.045

100

0.537
  comM Vibrio campbellii strain DS40M4

53.175

100

0.533
  comM Legionella pneumophila str. Paris

48.29

98.807

0.477
  comM Legionella pneumophila strain ERS1305867

48.29

98.807

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.772

100

0.429