Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IT895_RS17925 Genome accession   NZ_CP065230
Coordinates   3871663..3873171 (+) Length   502 a.a.
NCBI ID   WP_199284236.1    Uniprot ID   A0A7T0WDS9
Organism   Halomonas sp. A40-4     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3866663..3878171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IT895_RS17905 (IT895_17925) - 3866884..3867246 (+) 363 WP_199284232.1 accessory factor UbiK family protein -
  IT895_RS17910 (IT895_17930) - 3867375..3868334 (+) 960 WP_199284233.1 helix-turn-helix domain-containing protein -
  IT895_RS17915 (IT895_17935) - 3868434..3870542 (+) 2109 WP_199284234.1 TonB-dependent siderophore receptor -
  IT895_RS17920 (IT895_17940) - 3870679..3871563 (+) 885 WP_199284235.1 ABC transporter substrate-binding protein -
  IT895_RS17925 (IT895_17945) comM 3871663..3873171 (+) 1509 WP_199284236.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IT895_RS17930 (IT895_17950) - 3873214..3873474 (+) 261 WP_199284237.1 HigA family addiction module antitoxin -
  IT895_RS17935 (IT895_17955) - 3873477..3873635 (+) 159 WP_199284238.1 hypothetical protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53575.77 Da        Isoelectric Point: 7.5296

>NTDB_id=508257 IT895_RS17925 WP_199284236.1 3871663..3873171(+) (comM) [Halomonas sp. A40-4]
MTLAIVATRAGVGLDAPAVHVEVHLANGLPGLTLVGLPETAVKESRERVRSALVNAGFDFPNTRRITLNLAPADLPKEGG
RFDLPIALGILAASGQIPVDALEGMEFAGELALDGKLRAVPGILPFALAARRAKKALIIPRACADEAALAGDLPVLPADT
LWDVVAHLLDQEKIPPHQLPASVKSPAPMADLADVRGQQQARRALEVAAAGGHNLLFAGPPGTGKTMLASRLPGILPPLS
EEDALAVAAVRSVCGLPLEADWGQRPFRQPHHSSSAAALVGGGSKPKPGEISLAHHGVLFLDELPEFSRSVLEVLRQPLE
TGEIHLARASHERRYPAQFQLVAAMNPCPCGHLGDPRNRCQCTASQIQRYQNRLSGPLLDRIDLQVEVPALPPEQLTAQT
QGESSEAVRQRVMAARERQMARGALNSQLSGKALETACALNDEERAWLAGVLEKLKLSARAYHRVLRVALTLADLQGEPK
PTQPHLIEAIGYRQLDRMLKGA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=508257 IT895_RS17925 WP_199284236.1 3871663..3873171(+) (comM) [Halomonas sp. A40-4]
ATGACGCTTGCCATTGTGGCGACACGGGCCGGGGTCGGCCTGGACGCACCGGCAGTGCACGTGGAGGTGCACCTGGCCAA
CGGTTTGCCTGGCTTGACGTTAGTCGGCCTGCCGGAAACCGCCGTCAAAGAAAGCCGCGAACGGGTGCGTAGCGCCCTGG
TCAACGCCGGTTTTGACTTTCCCAATACCCGGCGCATCACCTTAAACCTGGCCCCGGCCGATTTACCCAAAGAGGGCGGC
CGCTTCGACCTGCCCATCGCGCTGGGCATTCTTGCCGCCTCCGGGCAGATTCCCGTCGACGCTTTGGAAGGCATGGAGTT
TGCGGGCGAACTGGCGCTGGACGGCAAGCTGCGCGCGGTACCCGGTATCCTGCCCTTTGCCCTGGCCGCGCGGCGCGCCA
AGAAGGCACTGATCATCCCCCGCGCCTGCGCCGATGAAGCCGCGCTGGCGGGAGATTTGCCGGTGCTACCCGCCGACACC
CTATGGGATGTCGTCGCCCACCTGCTCGATCAGGAAAAAATCCCGCCCCATCAACTGCCCGCCTCGGTCAAAAGCCCGGC
GCCAATGGCCGACCTGGCCGACGTGCGTGGCCAGCAACAGGCCCGGCGCGCCCTGGAAGTCGCCGCTGCTGGCGGCCATA
ATCTGCTTTTCGCGGGCCCACCAGGCACCGGCAAGACCATGCTCGCCAGTCGCCTGCCCGGTATTTTGCCGCCACTCTCG
GAAGAAGATGCGCTGGCCGTGGCGGCGGTGCGTTCGGTGTGCGGGCTGCCGCTGGAAGCCGACTGGGGCCAGCGACCCTT
CAGACAACCCCACCACAGCTCCAGCGCCGCGGCACTGGTGGGCGGCGGCTCAAAACCCAAACCCGGCGAAATCTCGCTGG
CCCACCATGGCGTGCTGTTCCTGGATGAACTGCCGGAATTTTCCCGAAGCGTACTGGAAGTTTTAAGACAACCGCTGGAA
ACCGGCGAAATTCACCTCGCCCGCGCCAGCCACGAGCGCCGTTACCCGGCGCAATTTCAGCTGGTGGCAGCAATGAACCC
CTGCCCCTGCGGGCATCTCGGCGATCCGCGCAACCGCTGCCAGTGCACCGCCAGCCAGATCCAGCGCTATCAGAACAGGC
TATCAGGCCCGCTGCTCGACCGCATCGACCTGCAGGTAGAAGTCCCGGCACTGCCACCGGAGCAGCTCACCGCGCAAACC
CAGGGCGAATCATCCGAAGCCGTGCGTCAGCGCGTCATGGCCGCCCGGGAACGGCAAATGGCAAGAGGTGCGCTCAACAG
CCAACTCAGCGGCAAGGCGCTGGAGACGGCCTGCGCCCTTAATGATGAAGAGCGCGCCTGGCTGGCGGGGGTGCTGGAAA
AACTCAAGCTCTCTGCCCGCGCTTACCACCGCGTGCTGCGCGTCGCACTTACCCTCGCCGACCTGCAGGGTGAACCCAAG
CCCACCCAGCCCCACTTAATCGAAGCCATCGGCTACCGGCAGTTGGATCGGATGTTGAAGGGGGCTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T0WDS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.41

100

0.57
  comM Glaesserella parasuis strain SC1401

55.227

100

0.558
  comM Vibrio cholerae strain A1552

55.666

100

0.558
  comM Vibrio campbellii strain DS40M4

55.07

100

0.552
  comM Legionella pneumophila str. Paris

52.096

99.801

0.52
  comM Legionella pneumophila strain ERS1305867

52.096

99.801

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.39

99.203

0.47