Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I3X05_RS14665 Genome accession   NZ_CP065217
Coordinates   3114307..3114861 (-) Length   184 a.a.
NCBI ID   WP_337970834.1    Uniprot ID   A0AAJ4LTZ2
Organism   Vibrio navarrensis strain 20-VB00237     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3109307..3119861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS14645 (I3X05_14985) - 3109750..3110058 (-) 309 WP_319023900.1 MSHA biogenesis protein MshK -
  I3X05_RS14650 (I3X05_14990) pilO 3110060..3110710 (-) 651 WP_045571691.1 type 4a pilus biogenesis protein PilO -
  I3X05_RS14655 (I3X05_14995) - 3110710..3112149 (-) 1440 WP_193157719.1 MSHA biogenesis protein MshI -
  I3X05_RS14660 (I3X05_15000) csrD 3112162..3114156 (-) 1995 WP_045571693.1 RNase E specificity factor CsrD -
  I3X05_RS14665 (I3X05_15005) ssb 3114307..3114861 (-) 555 WP_337970834.1 single-stranded DNA-binding protein Machinery gene
  I3X05_RS14670 (I3X05_15010) - 3114903..3115115 (-) 213 WP_193157718.1 hypothetical protein -
  I3X05_RS14675 (I3X05_15015) qstR 3115158..3115805 (+) 648 WP_045571696.1 LuxR C-terminal-related transcriptional regulator Regulator
  I3X05_RS14680 (I3X05_15020) galU 3115971..3116843 (+) 873 WP_045571697.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  I3X05_RS14685 (I3X05_15025) uvrA 3116986..3119808 (+) 2823 WP_045571698.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20251.33 Da        Isoelectric Point: 6.0871

>NTDB_id=508212 I3X05_RS14665 WP_337970834.1 3114307..3114861(-) (ssb) [Vibrio navarrensis strain 20-VB00237]
MASRGINKVILVGNLGNDPEIRYMPSGGAVANITVATSETWRDKATGEPREKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTDIVVQGYSGVMQMLGGRQQGGAPAMGGAPQAQQQGGWGQPQQPAAHQQQSYQAPAQQHAQ
QHAPQQSQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=508212 I3X05_RS14665 WP_337970834.1 3114307..3114861(-) (ssb) [Vibrio navarrensis strain 20-VB00237]
ATGGCCAGCCGTGGAATTAATAAAGTAATCTTGGTAGGGAACCTGGGTAACGACCCTGAAATTCGTTATATGCCAAGCGG
CGGTGCAGTGGCTAACATTACCGTTGCTACTTCGGAAACTTGGCGCGATAAAGCGACTGGCGAACCGCGTGAAAAAACGG
AATGGCATCGTGTTACCCTGTATGGAAAACTCGCTGAAGTCGCAGGTGAATACCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAATTGCAGACCCGTAAGTGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACGGACATCGTGGTACAAGGCTA
CAGCGGTGTGATGCAGATGCTGGGTGGACGCCAACAAGGTGGTGCGCCAGCGATGGGTGGTGCACCTCAGGCGCAGCAGC
AAGGGGGTTGGGGACAGCCACAACAACCTGCCGCGCATCAGCAGCAGTCATATCAAGCGCCTGCACAGCAGCATGCACAG
CAGCATGCGCCGCAGCAATCTCAGCCGCAGTATAATGAACCACCAATGGATTTCGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.645

100

0.815
  ssb Glaesserella parasuis strain SC1401

53.191

100

0.543
  ssb Neisseria meningitidis MC58

47.12

100

0.489
  ssb Neisseria gonorrhoeae MS11

47.12

100

0.489