Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   I3X05_RS14675 Genome accession   NZ_CP065217
Coordinates   3115158..3115805 (+) Length   215 a.a.
NCBI ID   WP_045571696.1    Uniprot ID   A0A0F2HGL1
Organism   Vibrio navarrensis strain 20-VB00237     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3110158..3120805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3X05_RS14655 (I3X05_14995) - 3110710..3112149 (-) 1440 WP_193157719.1 MSHA biogenesis protein MshI -
  I3X05_RS14660 (I3X05_15000) csrD 3112162..3114156 (-) 1995 WP_045571693.1 RNase E specificity factor CsrD -
  I3X05_RS14665 (I3X05_15005) ssb 3114307..3114861 (-) 555 WP_337970834.1 single-stranded DNA-binding protein Machinery gene
  I3X05_RS14670 (I3X05_15010) - 3114903..3115115 (-) 213 WP_193157718.1 hypothetical protein -
  I3X05_RS14675 (I3X05_15015) qstR 3115158..3115805 (+) 648 WP_045571696.1 LuxR C-terminal-related transcriptional regulator Regulator
  I3X05_RS14680 (I3X05_15020) galU 3115971..3116843 (+) 873 WP_045571697.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  I3X05_RS14685 (I3X05_15025) uvrA 3116986..3119808 (+) 2823 WP_045571698.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24581.50 Da        Isoelectric Point: 9.5591

>NTDB_id=508213 I3X05_RS14675 WP_045571696.1 3115158..3115805(+) (qstR) [Vibrio navarrensis strain 20-VB00237]
MRKSSYARSLFFLQRAHAQPPVFIDTLARAIDLPIPAINPETLMRIDPLHRNRILLIDYQEHKALLSQIKNLPLICKNFE
TIIFNVPKRLSTDELLGLGQSKAVFYSDSSVEKIAEGAIAVIEGQNWLPRHIQAQLLHYYRNMFNTHTAPANVDLTIREI
QVLRCLQAGASNAHIAEDLFISEYTVKSHLYQIFKKLSVKNRLQATAWADQHLLS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=508213 I3X05_RS14675 WP_045571696.1 3115158..3115805(+) (qstR) [Vibrio navarrensis strain 20-VB00237]
ATGAGAAAATCCTCCTATGCCAGAAGCTTATTCTTTCTCCAGCGAGCACACGCACAGCCCCCAGTATTTATTGATACCTT
AGCACGCGCTATCGATCTTCCGATACCAGCGATTAACCCAGAAACCTTGATGCGTATCGATCCATTGCACCGCAACCGCA
TCCTGCTGATCGACTATCAAGAACACAAAGCATTGCTTTCACAAATTAAAAATCTGCCACTGATTTGCAAAAACTTTGAA
ACCATCATTTTCAACGTACCAAAGCGACTGAGCACCGATGAACTGCTCGGACTTGGGCAAAGCAAAGCGGTGTTCTACTC
TGATAGCAGCGTCGAAAAAATTGCGGAAGGTGCTATTGCCGTGATTGAAGGGCAAAACTGGCTACCTCGCCACATTCAAG
CGCAGCTTCTGCATTACTACCGCAATATGTTCAACACCCATACCGCGCCCGCCAATGTGGATCTGACTATTCGCGAAATT
CAAGTGCTACGTTGCTTACAAGCTGGAGCGAGCAATGCCCACATCGCCGAAGATCTGTTTATCAGCGAATACACGGTCAA
ATCGCATCTCTACCAGATTTTTAAAAAGCTTTCGGTAAAAAACCGTCTTCAGGCCACCGCCTGGGCCGATCAACATCTAC
TCTCGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HGL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

63.594

100

0.642
  qstR Vibrio campbellii strain DS40M4

63.256

100

0.633
  qstR Vibrio cholerae strain A1552

51.613

100

0.521