Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NGFG_RS00685 Genome accession   NC_022240
Coordinates   135133..135414 (+) Length   93 a.a.
NCBI ID   WP_003696701.1    Uniprot ID   A0A0H4IVZ5
Organism   Neisseria gonorrhoeae MS11     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 130133..140414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGFG_RS00650 (NGFG_00259) - 130238..131392 (+) 1155 WP_003694771.1 cupin domain-containing protein -
  NGFG_RS00655 (NGFG_00260) - 131401..131628 (+) 228 WP_003694773.1 hypothetical protein -
  NGFG_RS12475 - 131703..131975 (+) 273 WP_226888059.1 hypothetical protein -
  NGFG_RS00665 (NGFG_00262) - 132036..133310 (+) 1275 WP_003694775.1 HlyD family secretion protein -
  NGFG_RS00670 (NGFG_00263) - 133495..133842 (+) 348 WP_003687399.1 hypothetical protein -
  NGFG_RS00675 (NGFG_00264) - 133856..134071 (+) 216 WP_003687400.1 hypothetical protein -
  NGFG_RS00680 - 134173..134724 (+) 552 Protein_122 cysteine peptidase family C39 domain-containing protein -
  NGFG_RS15720 - 134710..134940 (+) 231 WP_225577515.1 ATP-binding cassette domain-containing protein -
  NGFG_RS15390 - 134938..135054 (-) 117 Protein_124 IS5/IS1182 family transposase -
  NGFG_RS00685 comA 135133..135414 (+) 282 WP_003696701.1 ATP-binding cassette domain-containing protein Regulator
  NGFG_RS00690 (NGFG_00266) - 135435..136661 (-) 1227 WP_003694779.1 YihY family inner membrane protein -
  NGFG_RS16380 - 136760..136945 (+) 186 Protein_127 NAD(P)H:quinone oxidoreductase -
  NGFG_RS00700 (NGFG_00267) queC 137149..137808 (+) 660 WP_003692586.1 7-cyano-7-deazaguanine synthase QueC -
  NGFG_RS00705 (NGFG_00268) - 137836..138351 (+) 516 WP_003694780.1 DUF1543 domain-containing protein -
  NGFG_RS00710 (NGFG_00269) queD 138439..138861 (+) 423 WP_003694782.1 6-carboxytetrahydropterin synthase QueD -
  NGFG_RS00715 (NGFG_00270) - 139127..139495 (+) 369 WP_003694785.1 DUF1304 domain-containing protein -
  NGFG_RS00720 (NGFG_00271) - 139492..140130 (+) 639 WP_003687414.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10117.78 Da        Isoelectric Point: 6.4598

>NTDB_id=50800 NGFG_RS00685 WP_003696701.1 135133..135414(+) (comA) [Neisseria gonorrhoeae MS11]
MIREEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDEAASHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=50800 NGFG_RS00685 WP_003696701.1 135133..135414(+) (comA) [Neisseria gonorrhoeae MS11]
ATGATTCGCGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGTATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGAAGCGGCCAGTCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H4IVZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

46.154

97.849

0.452
  comA Streptococcus mitis NCTC 12261

45.055

97.849

0.441
  comA Streptococcus pneumoniae TIGR4

45.055

97.849

0.441
  comA Streptococcus pneumoniae Rx1

45.055

97.849

0.441
  comA Streptococcus pneumoniae R6

45.055

97.849

0.441
  comA Streptococcus pneumoniae D39

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

47.126

93.548

0.441
  comA Streptococcus gordonii str. Challis substr. CH1

43.956

97.849

0.43

Multiple sequence alignment