Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BTD91_RS04790 Genome accession   NZ_CP065150
Coordinates   1126172..1126735 (-) Length   187 a.a.
NCBI ID   WP_017055929.1    Uniprot ID   A0A109DAW8
Organism   Vibrio kanaloae strain R17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1121172..1131735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS04770 (BTD91_04770) - 1121564..1121896 (-) 333 WP_017055933.1 hypothetical protein -
  BTD91_RS04775 (BTD91_04775) gspM 1121889..1122536 (-) 648 WP_077679911.1 type II secretion system protein GspM -
  BTD91_RS04780 (BTD91_04780) - 1122536..1123978 (-) 1443 WP_077679910.1 MSHA biogenesis protein MshI -
  BTD91_RS04785 (BTD91_04785) csrD 1123981..1125996 (-) 2016 WP_077679909.1 RNase E specificity factor CsrD -
  BTD91_RS04790 (BTD91_04790) ssb 1126172..1126735 (-) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  BTD91_RS04795 (BTD91_04795) qstR 1127014..1127661 (+) 648 WP_017055928.1 LuxR C-terminal-related transcriptional regulator Regulator
  BTD91_RS04800 (BTD91_04800) galU 1127822..1128694 (+) 873 WP_077679908.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BTD91_RS04805 (BTD91_04805) uvrA 1128844..1131675 (+) 2832 WP_077679907.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20632.76 Da        Isoelectric Point: 5.2358

>NTDB_id=507416 BTD91_RS04790 WP_017055929.1 1126172..1126735(-) (ssb) [Vibrio kanaloae strain R17]
MASRGVNKVILVGNLGNDPEIRYMPSGSAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQSQQQYSAPAQQQP
KAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=507416 BTD91_RS04790 WP_017055929.1 1126172..1126735(-) (ssb) [Vibrio kanaloae strain R17]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAGTGG
CAGTGCTGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGAAAGCTGGCGGAAGTTGCTGGTGAATACCTGCGCAAAGGGTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACGACTGAAGTGGTTGTTCAAGGGTT
CAACGGTGTCATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAGCCACAACAACAGCAGCAATCACAACAACAGTACAGTGCTCCTGCTCAACAGCAGCCT
AAAGCACCCCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATT
TTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DAW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.894

100

0.807
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.567
  ssb Neisseria meningitidis MC58

45.455

100

0.455
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.455