Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BTD91_RS04795 Genome accession   NZ_CP065150
Coordinates   1127014..1127661 (+) Length   215 a.a.
NCBI ID   WP_017055928.1    Uniprot ID   A0A2N7JBQ5
Organism   Vibrio kanaloae strain R17     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122014..1132661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS04780 (BTD91_04780) - 1122536..1123978 (-) 1443 WP_077679910.1 MSHA biogenesis protein MshI -
  BTD91_RS04785 (BTD91_04785) csrD 1123981..1125996 (-) 2016 WP_077679909.1 RNase E specificity factor CsrD -
  BTD91_RS04790 (BTD91_04790) ssb 1126172..1126735 (-) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  BTD91_RS04795 (BTD91_04795) qstR 1127014..1127661 (+) 648 WP_017055928.1 LuxR C-terminal-related transcriptional regulator Regulator
  BTD91_RS04800 (BTD91_04800) galU 1127822..1128694 (+) 873 WP_077679908.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BTD91_RS04805 (BTD91_04805) uvrA 1128844..1131675 (+) 2832 WP_077679907.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24989.19 Da        Isoelectric Point: 9.9849

>NTDB_id=507417 BTD91_RS04795 WP_017055928.1 1127014..1127661(+) (qstR) [Vibrio kanaloae strain R17]
MRKSRYARTLHFLCIDPSDTHLHIKAIEKHLSIPLYKMTTDDLMLVDRKQSNRILLVDYKAVPQLLAIFPNLYVIWKNNE
ILLFNVPQPLPTSELLNYGVLKGLFYDSEKKIKIAKGLREVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=507417 BTD91_RS04795 WP_017055928.1 1127014..1127661(+) (qstR) [Vibrio kanaloae strain R17]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATCGATCCCAGCGACACTCACCTACACATAAAAGCGAT
AGAAAAGCATTTGTCTATTCCTCTCTACAAAATGACAACGGACGATTTGATGCTGGTAGATAGGAAACAGAGCAACCGTA
TTCTACTCGTCGATTACAAAGCGGTTCCACAATTACTTGCCATATTCCCTAACTTGTACGTTATATGGAAAAATAATGAG
ATCCTTTTATTTAATGTTCCGCAGCCGCTTCCTACCTCGGAGCTCCTTAACTATGGCGTACTAAAAGGGTTATTTTATGA
TTCCGAGAAAAAAATCAAAATAGCAAAAGGTCTTCGAGAGGTCATTGATGGTGATAACTGGTTACCGAGAAAGGTAACGA
ACCAACTGCTGTTTTATTACCGCAACATGGTCAACACCAACACAACACCCACTAATGTCGATTTAACCATCCGAGAGATC
CAAGTTATTCGCTGTCTTCAATCAGGTTCATCAAACACTCAGATAGCCGATGATTTATTTATTAGCGAGTTCACCGTCAA
ATCTCATCTCTATCAGATATTTCGCAAGTTAGCGGTTAAAAATAGAGTCCAAGCCATTGCTTGGGCAAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JBQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484