Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   I2436_RS08350 Genome accession   NZ_CP065060
Coordinates   1768334..1770310 (-) Length   658 a.a.
NCBI ID   WP_021321129.1    Uniprot ID   A0AAW3GKT5
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ28     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763334..1775310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2436_RS08330 (GDAKBCAL_01669) amiF 1763850..1764773 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2436_RS08335 (GDAKBCAL_01670) amiE 1764766..1765836 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2436_RS08340 (GDAKBCAL_01671) amiD 1765845..1766771 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  I2436_RS08345 (GDAKBCAL_01672) amiC 1766771..1768270 (-) 1500 WP_012516281.1 ABC transporter permease Regulator
  I2436_RS08350 (GDAKBCAL_01673) amiA3 1768334..1770310 (-) 1977 WP_021321129.1 ABC transporter substrate-binding protein Regulator
  I2436_RS08355 (GDAKBCAL_01674) pbp3 1770618..1771856 (+) 1239 WP_165627243.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I2436_RS08360 (GDAKBCAL_01675) pbp3 1772179..1773414 (+) 1236 WP_021321131.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I2436_RS08365 (GDAKBCAL_01676) - 1773497..1774678 (+) 1182 WP_165627948.1 serine hydrolase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72758.16 Da        Isoelectric Point: 5.3425

>NTDB_id=506568 I2436_RS08350 WP_021321129.1 1768334..1770310(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MKKSKWLTTLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNEITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTYYDGQDQESLFRNFDDGAYSAARLFPTTPSYKNVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKSLRSTLVPPTFVQIGNKNFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQGETY
QNISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKVVPFSGAFAWAGIKGDTYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEKYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=506568 I2436_RS08350 WP_021321129.1 1768334..1770310(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGAAGAAAAGTAAATGGTTGACAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGAGATAACAACGAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCACTTGACAAAAAAACAGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACCTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATCC
TGTATAATGGTCCATTTCTTATCACAGCTTTGACAAGTAAATCCTCTATTGAGCTTGTCAAAAACGAAAACTATTGGGAT
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACTTATTATGATGGACAGGATCAGGAGTCATTGTTTAGAAACTTTGA
TGACGGTGCTTACTCTGCAGCGAGATTATTCCCAACAACACCTTCTTACAAAAACGTTAAGAAAAAATATGGAGATAGCA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCATACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTTCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAATCGCTTCGTAGCACACTTGTGCCACCGACAT
TTGTGCAGATCGGCAACAAGAATTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTA
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAGAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGCGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGGGAGAGACCTAT
CAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGATTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGATTA
TGTCGACCCATCGTCATATCTTGATATTTTCAACCCAACGCTTGCAAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGCAAGATTACTGAT
GATCTCAACGCCCGCTACACGCTTTATGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCGACTATCTC
ACTTGGTGGAACACCACGTGTAACTAAAGTGGTACCGTTTTCAGGTGCCTTTGCTTGGGCTGGTATTAAGGGTGATACCT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAAAATATAATAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

55.909

100

0.561
  amiA3 Streptococcus thermophilus LMD-9

55.758

100

0.559
  amiA Streptococcus salivarius strain HSISS4

55.842

100

0.559