Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   I2436_RS08335 Genome accession   NZ_CP065060
Coordinates   1764766..1765836 (-) Length   356 a.a.
NCBI ID   WP_012516279.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ28     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759766..1770836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2436_RS08330 (GDAKBCAL_01669) amiF 1763850..1764773 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2436_RS08335 (GDAKBCAL_01670) amiE 1764766..1765836 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2436_RS08340 (GDAKBCAL_01671) amiD 1765845..1766771 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  I2436_RS08345 (GDAKBCAL_01672) amiC 1766771..1768270 (-) 1500 WP_012516281.1 ABC transporter permease Regulator
  I2436_RS08350 (GDAKBCAL_01673) amiA3 1768334..1770310 (-) 1977 WP_021321129.1 ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39734.86 Da        Isoelectric Point: 6.1118

>NTDB_id=506565 I2436_RS08335 WP_012516279.1 1764766..1765836(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MTEKQEIILSAKNIVVEFDVRDRVLTAIRDVSLDLYKGEVLAVVGESGSGKSVLTKTFTGMLEANGRVASGTITYAGQEL
TELKNHKDWEAIRGSKIATIFQDPMTSLDPIQTIGSQITEVIVKHQKKSRSEAKALAIDYMTRVGIPEPEKRFGEYPFQY
SGGMRQRIVIAIALACKPDILICDEPTTALDVTIQAQIIDLLKTLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIIE
YGKVEEIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMAIDFEETVPRFTISDTHWAK
TWLLHPDAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=506565 I2436_RS08335 WP_012516279.1 1764766..1765836(-) (amiE) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGACTGAAAAACAAGAAATTATATTAAGTGCTAAAAATATTGTTGTAGAGTTTGATGTGCGTGATCGTGTACTGACCGC
TATTCGTGATGTTTCTCTTGATTTGTATAAGGGAGAGGTATTGGCTGTTGTTGGTGAGTCAGGCTCTGGCAAGTCTGTTT
TAACTAAGACATTTACAGGAATGCTGGAGGCAAATGGACGTGTTGCTTCAGGGACGATAACCTATGCAGGTCAAGAACTA
ACAGAGCTTAAAAATCATAAAGACTGGGAAGCTATTCGCGGCTCTAAAATTGCCACTATCTTTCAGGACCCAATGACTAG
TCTAGATCCGATTCAAACGATTGGCAGCCAGATTACTGAGGTTATTGTTAAGCATCAGAAAAAATCTAGATCAGAGGCTA
AGGCTTTAGCAATCGACTATATGACAAGGGTCGGTATTCCTGAGCCAGAAAAGCGTTTTGGAGAGTATCCTTTCCAATAT
TCTGGTGGTATGAGACAGCGTATTGTTATTGCCATTGCCCTAGCTTGTAAGCCAGATATTCTGATCTGTGATGAGCCGAC
AACAGCTCTTGACGTTACCATCCAGGCTCAGATTATTGACCTATTAAAGACGCTTCAAAAAGAGTATCACTTCACCATTA
TCTTTATCACGCATGACCTAGGAGTGGTTGCAAGTATTGCTGACAAGGTTGCTGTTATGTACGCAGGGGAGATTATTGAA
TACGGAAAGGTTGAGGAAATCTTCTATGATCCTCGTCACCCCTACACATGGAGCTTATTATCTAGCCTACCGCAATTGGC
AGATGAAAAGGGCGTTCTGTTTTCAATTCCAGGGACACCTCCGTCCCTATACAAGCCAATTGTTGGGGATGCCTTTGCGC
CACGCTCTCAGTATGCTATGGCCATTGATTTTGAAGAAACAGTTCCTCGTTTTACGATCAGTGACACGCACTGGGCAAAA
ACCTGGCTCCTACACCCAGATGCTCCTAAGGTTCAAAAGCCAGCTGTTATTCAGGATTTACACCAAAAAATATTGAAAAA
AATGTCACGCCAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.456

93.539

0.528