Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   I2436_RS08340 Genome accession   NZ_CP065060
Coordinates   1765845..1766771 (-) Length   308 a.a.
NCBI ID   WP_021321128.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ28     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760845..1771771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2436_RS08330 (GDAKBCAL_01669) amiF 1763850..1764773 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  I2436_RS08335 (GDAKBCAL_01670) amiE 1764766..1765836 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  I2436_RS08340 (GDAKBCAL_01671) amiD 1765845..1766771 (-) 927 WP_021321128.1 oligopeptide ABC transporter permease OppC Regulator
  I2436_RS08345 (GDAKBCAL_01672) amiC 1766771..1768270 (-) 1500 WP_012516281.1 ABC transporter permease Regulator
  I2436_RS08350 (GDAKBCAL_01673) amiA3 1768334..1770310 (-) 1977 WP_021321129.1 ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34532.41 Da        Isoelectric Point: 7.1547

>NTDB_id=506566 I2436_RS08340 WP_021321128.1 1765845..1766771(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVVMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVVIGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=506566 I2436_RS08340 WP_021321128.1 1765845..1766771(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCACGTAAATCAACCGTTGTGATGCTGGTTATTTTAATCGCTATTA
TTTTGATGAGCTTCATCTATCCTATGTTTGCCAACTATGACTTTGGTGATGTGAGCAATATTAATGATTTTTCAAAGCGT
TATATCGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTCATTGCTACCATCATCAATATGATTATTGGAGTTGTTATTGGTGGTATTTGGGGTG
TTTCCAAGGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTA
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAATCTTTTACCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAATAATTTAACAACAAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.649

100

0.756
  amiD Streptococcus thermophilus LMG 18311

75

100

0.75
  amiD Streptococcus thermophilus LMD-9

75

100

0.75