Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MY9_RS17855 Genome accession   NC_017743
Coordinates   3514061..3515443 (-) Length   460 a.a.
NCBI ID   WP_014665561.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3509061..3520443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS17820 (MY9_3589) flgL 3509224..3510120 (-) 897 WP_014665554.1 flagellar hook-associated protein FlgL -
  MY9_RS17825 (MY9_3590) flgK 3510131..3511654 (-) 1524 WP_014665555.1 flagellar hook-associated protein FlgK -
  MY9_RS17830 (MY9_3591) flgN 3511673..3512155 (-) 483 WP_014665556.1 flagellar protein FlgN -
  MY9_RS17835 (MY9_3592) flgM 3512170..3512436 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  MY9_RS17840 (MY9_3593) - 3512517..3512936 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  MY9_RS17845 comFC 3513010..3513732 (-) 723 WP_041521429.1 ComF family protein Machinery gene
  MY9_RS17850 (MY9_3595) comFB 3513696..3513992 (-) 297 WP_014665560.1 late competence protein ComFB -
  MY9_RS17855 (MY9_3596) comFA 3514061..3515443 (-) 1383 WP_014665561.1 ATP-dependent helicase ComFA Machinery gene
  MY9_RS17860 (MY9_3597) - 3515550..3516395 (-) 846 WP_014665562.1 DegV family protein -
  MY9_RS17865 (MY9_3598) degU 3516493..3517182 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MY9_RS17870 (MY9_3599) degS 3517265..3518422 (-) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator
  MY9_RS17875 (MY9_3600) - 3518639..3519292 (+) 654 WP_014665564.1 YigZ family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 52204.11 Da        Isoelectric Point: 10.0445

>NTDB_id=50639 MY9_RS17855 WP_014665561.1 3514061..3515443(-) (comFA) [Bacillus sp. JS]
MKVPTEKHISFSRELQQTLQSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSFGKD
QLYCRSCIMMGRVSEEVPLYSWKDGDEQNWKSVKLTWGGKLSSGQQKAANILIEAISKREELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKAQNGQLHSVRIPARHHRQPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAASFKDVNCRTATVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALIQIAGRTGRHKEHADGDVIFFHYGKTKSMLDAKKHIKEMNGLAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=50639 MY9_RS17855 WP_014665561.1 3514061..3515443(-) (comFA) [Bacillus sp. JS]
GTGAAGGTGCCAACTGAAAAGCACATTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGGAC
TGAACTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGCTATATCACCGCTGAAAACTCTATATCTATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATTTGGAAAAGAT
CAGCTGTATTGCCGTTCCTGTATCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGATGGAGATGA
ACAAAACTGGAAGTCTGTTAAGCTGACATGGGGCGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATATTTTAATTG
AAGCAATATCAAAAAGAGAAGAACTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTATTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACTCCTCGCACCGATGTTGTATTAGAGCTTGCCCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTCATGA
TTTCCACCACGCATCAGCTTTTGCGATATAAAGATGCATTTGATGTTATGATCGTTGATGAGGTTGACGCTTTTCCGTAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGTACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCGCAGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGCAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCCTCCGTTTCTATTCTAGAAAAGGCTGCTGC
GAGCTTTAAAGATGTTAATTGCCGAACCGCGACTGTGCATGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTTACGGTTCCCAAGGTGCAAACAGGTGTA
CTAGGAGCGGAATCGCCTATCTTTACGGAAAGCGCACTTATTCAAATCGCAGGAAGAACCGGCCGGCATAAAGAGCATGC
AGACGGCGATGTCATCTTCTTTCACTACGGCAAAACAAAGAGTATGCTCGATGCAAAAAAGCATATAAAAGAAATGAACG
GATTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

92.174

100

0.922

Multiple sequence alignment