Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SCI_RS07415 Genome accession   NC_022238
Coordinates   1501740..1502693 (+) Length   317 a.a.
NCBI ID   WP_020997981.1    Uniprot ID   U2YDF2
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1496740..1507693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS10020 (SCI_1444) - 1496753..1497340 (+) 588 WP_020997978.1 helix-turn-helix domain-containing protein -
  SCI_RS07390 - 1497486..1498649 (+) 1164 Protein_1469 tyrosine-type recombinase/integrase -
  SCI_RS07395 (SCI_1447) - 1498807..1499499 (-) 693 WP_003036126.1 phosphoglycerate mutase -
  SCI_RS07400 (SCI_1448) - 1499637..1500098 (-) 462 WP_003035860.1 Fur family transcriptional regulator -
  SCI_RS07405 (SCI_1449) - 1500267..1500542 (-) 276 WP_003036014.1 HU family DNA-binding protein -
  SCI_RS07410 (SCI_1450) - 1500671..1501504 (-) 834 WP_020997980.1 DegV family protein -
  SCI_RS07415 (SCI_1451) ceuB 1501740..1502693 (+) 954 WP_020997981.1 ABC transporter permease Machinery gene
  SCI_RS07420 (SCI_1452) - 1502686..1503648 (+) 963 WP_006268532.1 iron chelate uptake ABC transporter family permease subunit -
  SCI_RS07425 (SCI_1453) - 1503649..1504401 (+) 753 WP_006268271.1 ABC transporter ATP-binding protein -
  SCI_RS07430 (SCI_1454) - 1504423..1505394 (+) 972 WP_020997982.1 siderophore ABC transporter substrate-binding protein -
  SCI_RS07435 (SCI_1455) - 1505457..1506188 (-) 732 WP_020999399.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35363.19 Da        Isoelectric Point: 10.0791

>NTDB_id=50641 SCI_RS07415 WP_020997981.1 1501740..1502693(+) (ceuB) [Streptococcus constellatus subsp. pharyngis C1050]
MKQTKFLGILCLILAFISIMVGASSFSWHKLLSGETNTWLLFLESRLPRTISIILAGSSMSIAGLLMQTVTQNHFAAPST
IGTVNAAKFGILLSLFFFPTANLAQKMLFAFVSSIFFTIIFIRFIRKLSFKEKWLLPLVGIIYSGVISATAEILAYRFDL
VQSMTSWTQGSFAMIQTHQYEWLFLSFVILIAVWRLSATFTIMNLGEDASHNLGISFYQMEGLSLFLIALTTSVTMITVG
SLPFIGVIIPNIVRKFYGDHITRIKSITALTGAGLILICDIMSRMVIRPYEISVSLILGIFGSLTFIYLLWRGATHE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=50641 SCI_RS07415 WP_020997981.1 1501740..1502693(+) (ceuB) [Streptococcus constellatus subsp. pharyngis C1050]
ATGAAACAGACAAAATTTTTAGGAATTCTTTGTCTTATACTGGCTTTCATTTCAATTATGGTTGGTGCTAGCAGTTTTTC
TTGGCATAAACTACTCAGTGGTGAGACTAACACTTGGCTATTATTTTTAGAGTCGCGCTTACCAAGGACTATTAGTATCA
TTTTAGCAGGATCTAGCATGAGTATTGCGGGACTTCTGATGCAAACTGTTACACAGAATCATTTTGCGGCGCCTAGTACA
ATTGGAACAGTAAATGCTGCAAAGTTCGGTATCCTTCTCAGCCTCTTCTTCTTTCCAACGGCGAATTTGGCTCAAAAAAT
GCTCTTCGCCTTTGTCTCTTCTATTTTTTTTACGATTATTTTTATTAGATTTATCAGAAAATTATCATTTAAGGAAAAAT
GGTTACTGCCACTTGTCGGAATTATTTATAGTGGTGTCATTAGCGCAACTGCTGAAATTCTTGCCTATCGTTTTGATCTA
GTGCAAAGTATGACATCGTGGACGCAAGGATCTTTTGCAATGATTCAGACACATCAATATGAGTGGCTTTTTTTGAGTTT
TGTTATTCTGATTGCTGTCTGGCGGTTGTCTGCTACTTTTACAATTATGAATCTAGGAGAAGATGCTAGCCATAATCTAG
GGATATCTTTTTATCAAATGGAAGGATTGAGCCTATTTCTCATTGCTCTCACAACCAGTGTGACAATGATTACAGTGGGC
TCGCTTCCTTTCATAGGCGTGATTATACCAAATATTGTGCGAAAATTTTATGGAGATCATATCACGCGCATCAAAAGTAT
TACTGCCCTGACGGGAGCAGGCTTAATTTTAATCTGTGATATTATGTCACGTATGGTGATCCGTCCCTACGAAATCTCAG
TTAGTTTGATTCTGGGAATTTTTGGAAGTTTAACATTCATTTATCTTTTATGGCGAGGTGCCACTCATGAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2YDF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

38.339

98.738

0.379

Multiple sequence alignment