Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SCI_RS07300 Genome accession   NC_022238
Coordinates   1484966..1485562 (-) Length   198 a.a.
NCBI ID   WP_006268506.1    Uniprot ID   F9P6X7
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1479966..1490562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS07280 (SCI_1425) - 1481037..1481741 (-) 705 WP_006268346.1 TIGR02206 family membrane protein -
  SCI_RS07285 (SCI_1426) - 1481748..1482295 (-) 548 Protein_1445 DUF1697 domain-containing protein -
  SCI_RS07290 (SCI_1427) murF 1482285..1483655 (-) 1371 WP_006268529.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SCI_RS07295 (SCI_1428) - 1483787..1484833 (-) 1047 WP_006268475.1 D-alanine--D-alanine ligase -
  SCI_RS07300 (SCI_1429) recR 1484966..1485562 (-) 597 WP_006268506.1 recombination mediator RecR Machinery gene
  SCI_RS07305 (SCI_1430) pbp2b 1485573..1487633 (-) 2061 WP_020997973.1 penicillin-binding protein PBP2B -
  SCI_RS10710 - 1487997..1488164 (-) 168 WP_006268192.1 hypothetical protein -
  SCI_RS07310 (SCI_1431) - 1488171..1489376 (-) 1206 WP_020997974.1 hypothetical protein -
  SCI_RS07315 (SCI_1432) HI0659 1489398..1489694 (-) 297 WP_020997975.1 helix-turn-helix domain-containing protein Machinery gene
  SCI_RS07320 (SCI_1433) - 1489684..1490049 (-) 366 WP_006268450.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SCI_RS07325 - 1490115..1490390 (-) 276 WP_006268376.1 terminase small subunit -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21640.70 Da        Isoelectric Point: 4.3019

>NTDB_id=50638 SCI_RS07300 WP_006268506.1 1484966..1485562(-) (recR) [Streptococcus constellatus subsp. pharyngis C1050]
MLYPTPIAKLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELTYCSICGNLTDDDPCAICTDETRDQS
TILVVEDSRDVSAMENIQEYRGLYHVLQGLISPMNGIGPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=50638 SCI_RS07300 WP_006268506.1 1484966..1485562(-) (recR) [Streptococcus constellatus subsp. pharyngis C1050]
ATGCTTTATCCAACACCGATTGCAAAATTGATTGATAGCTTCTCAAAATTACCAGGAATTGGCATAAAAACAGCAACGCG
TTTGGCGTTTTATACCATTGGTATGAGTGATGATGATGTCAATGAATTTGCTAAAAATTTGCTTGCAGCAAAACGTGAGC
TGACCTATTGTTCTATTTGTGGTAATCTAACGGATGATGATCCTTGTGCTATCTGCACCGATGAGACACGGGATCAATCT
ACTATTTTGGTTGTAGAAGATAGCCGAGATGTTTCTGCTATGGAAAATATTCAAGAATACCGTGGCTTGTACCATGTTTT
GCAGGGATTGATTTCTCCTATGAATGGTATTGGACCAGACGACATCAATCTGAAAAGTCTCATTACGCGGTTGATGGATA
GTGAGGTAACAGAGGTAATTGTGGCAACCAATGCGACAGCAGATGGGGAAGCAACTTCCATGTATATCTCACGGGTGTTA
AAACCAGCTGGTATCAAGGTAACGCGCCTGGCTCGTGGATTAGCAGTTGGTTCTGATATTGAATATGCAGACGAAGTGAC
GCTGCTTCGGGCTATTGAGAATCGCACAGAATTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P6X7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

91.414

100

0.914
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment