Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   MY9_RS17845 Genome accession   NC_017743
Coordinates   3513010..3513732 (-) Length   240 a.a.
NCBI ID   WP_041521429.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3508010..3518732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS17810 (MY9_3587) fliW 3508148..3508579 (-) 432 WP_014665552.1 flagellar assembly protein FliW -
  MY9_RS17815 (MY9_3588) - 3508600..3509175 (-) 576 WP_014665553.1 DUF6470 family protein -
  MY9_RS17820 (MY9_3589) flgL 3509224..3510120 (-) 897 WP_014665554.1 flagellar hook-associated protein FlgL -
  MY9_RS17825 (MY9_3590) flgK 3510131..3511654 (-) 1524 WP_014665555.1 flagellar hook-associated protein FlgK -
  MY9_RS17830 (MY9_3591) flgN 3511673..3512155 (-) 483 WP_014665556.1 flagellar protein FlgN -
  MY9_RS17835 (MY9_3592) flgM 3512170..3512436 (-) 267 WP_014665557.1 flagellar biosynthesis anti-sigma factor FlgM -
  MY9_RS17840 (MY9_3593) - 3512517..3512936 (-) 420 WP_014665558.1 TIGR03826 family flagellar region protein -
  MY9_RS17845 comFC 3513010..3513732 (-) 723 WP_041521429.1 ComF family protein Machinery gene
  MY9_RS17850 (MY9_3595) comFB 3513696..3513992 (-) 297 WP_014665560.1 late competence protein ComFB -
  MY9_RS17855 (MY9_3596) comFA 3514061..3515443 (-) 1383 WP_014665561.1 ATP-dependent helicase ComFA Machinery gene
  MY9_RS17860 (MY9_3597) - 3515550..3516395 (-) 846 WP_014665562.1 DegV family protein -
  MY9_RS17865 (MY9_3598) degU 3516493..3517182 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  MY9_RS17870 (MY9_3599) degS 3517265..3518422 (-) 1158 WP_014665563.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27267.72 Da        Isoelectric Point: 10.0037

>NTDB_id=50638 MY9_RS17845 WP_041521429.1 3513010..3513732(-) (comFC) [Bacillus sp. JS]
MPNKAGGGIHKLICLLCDSQFSQAVTWRALFLLKPDEKVCHSCRSKLKKITGHICTICGRPQSVYAVCRDCEAWKSRISH
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
GRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=50638 MY9_RS17845 WP_041521429.1 3513010..3513732(-) (comFC) [Bacillus sp. JS]
ATGCCAAACAAAGCAGGAGGAGGCATTCATAAACTGATCTGTCTGCTATGCGATTCGCAATTTTCTCAAGCTGTTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGACGAAAAGGTCTGTCATTCCTGCAGAAGTAAATTGAAAAAAATCACAGGACATA
TCTGCACCATATGCGGCAGACCTCAATCCGTTTATGCGGTATGCAGGGATTGTGAGGCGTGGAAATCAAGGATCAGTCAC
AGCTTGCTGCTCCGCCAAAATCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATTATAAATGCTTTTAAAAGCGATTTTTCTTCAACCTTTTCAAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTAAGCAAGGAACGGGAAGAGGAGCGCGGATTTAACCAGGCACAGCTCCTGGCAGAATGTTTA
GGCAGGCCCATCCACCATCCCCTAATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
CGCGCGTATTTTTGATACGAAAAACAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCGCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

92.5

100

0.925

Multiple sequence alignment